Q21P11 (RLMF_SACD2) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 38.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Ribosomal RNA large subunit methyltransferase F EC=2.1.1.181 Alternative name(s): 23S rRNA mA1618 methyltransferase rRNA adenine N-6-methyltransferase | ||||
| Gene names |
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| Organism | Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) [Complete proteome] [HAMAP] | ||||
| Taxonomic identifier | 203122 [NCBI] | ||||
| Taxonomic lineage | Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Alteromonadaceae › Saccharophagus |
Protein attributes
| Sequence length | 320 AA. |
| Sequence status | Complete. |
| Protein existence | Inferred from homology |
General annotation (Comments)
| Function | Specifically methylates the adenine in position 1618 of 23S rRNA By similarity. HAMAP MF_01848 |
| Catalytic activity | S-adenosyl-L-methionine + adenine(1618) in 23S rRNA = S-adenosyl-L-homocysteine + rRNA containing N(6)-methyladenine(1618) in 23S rRNA. HAMAP MF_01848 |
| Subcellular location | Cytoplasm Potential HAMAP MF_01848. |
| Sequence similarities | Belongs to the methyltransferase superfamily. METTL16/rlmF family. |
Ontologies
| Keywords | |
|---|---|
| Biological process | rRNA processing |
| Cellular component | Cytoplasm |
| Ligand | S-adenosyl-L-methionine |
| Molecular function | Methyltransferase Transferase |
| Technical term | Complete proteome |
| Gene Ontology (GO) | |
| Cellular component | cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell |
| Molecular function | rRNA (adenine-N6-)-methyltransferase activity Inferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||
Molecule processing | |||||||
|---|---|---|---|---|---|---|---|
| Chain | 1 – 320 | 320 | Ribosomal RNA large subunit methyltransferase F HAMAP MF_01848 | PRO_0000349944 | |||
Sequences
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References
| [1] | "Complete genome sequence of the complex carbohydrate-degrading marine bacterium, Saccharophagus degradans strain 2-40 T." Weiner R.M., Taylor L.E. II, Henrissat B., Hauser L., Land M., Coutinho P.M., Rancurel C., Saunders E.H., Longmire A.G., Zhang H., Bayer E.A., Gilbert H.J., Larimer F., Zhulin I.B., Ekborg N.A., Lamed R., Richardson P.M., Borovok I., Hutcheson S. PLoS Genet. 4:E1000087-E1000087(2008) [PubMed: 18516288] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 2-40 / ATCC 43961 / DSM 17024. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | CP000282 Genomic DNA. Translation: ABD79568.1. |
| RefSeq | YP_525780.1. NC_007912.1. |
3D structure databases | |
| ProteinModelPortal | Q21P11. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | Q21P11. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| GeneID | 3965443. |
| GenomeReviews | Gene locus Sde_0304 in contig CP000282_GR. |
| KEGG | sde:Sde_0304. |
| NMPDR | fig|203122.1.peg.2392. |
| PATRIC | 23399255. VBISacDeg56404_0333. |
Organism-specific databases | |
| CMR | Search... |
Phylogenomic databases | |
| eggNOG | COG3129. |
| HOGENOM | HBG747880. |
| OMA | DFANPEA. |
| PhylomeDB | Q21P11. |
| ProtClustDB | PRK11727. |
Enzyme and pathway databases | |
| BioCyc | SDEG203122:SDE_0304-MONOMER. |
Family and domain databases | |
| HAMAP | MF_01848. 23SrRNA_methyltr_F. [Tree] |
| InterPro | IPR016909. rRNA_lsu_methyltransferase_F. IPR010286. SAM-Mtase_prd. [Graphical view] |
| KO | K06970. |
| PANTHER | PTHR13393. DUF890. 1 hit. |
| Pfam | PF05971. Methyltransf_10. 1 hit. [Graphical view] |
| PIRSF | PIRSF029038. Mtase_YbiN_prd. 1 hit. |
| ProtoNet | Search... |
Entry information
| Entry name | RLMF_SACD2 | ||||||||
| Accession | Primary (citable) accession number: Q21P11 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Prokaryotic Protein Annotation Program | ||||||||
Relevant documents
| SIMILARITY comments Index of protein domains and families |

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