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Protein

Alpha-amylase

Gene

Sde_0573

Organism
Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotation, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:Sde_0573Imported
OrganismiSaccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024)Imported
Taxonomic identifieri203122 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaCellvibrionalesCellvibrionaceaeSaccharophagus
Proteomesi
  • UP000001947 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 25Sequence analysisAdd BLAST25
ChainiPRO_500420011726 – 566Alpha-amylaseSequence analysisAdd BLAST541

Interactioni

Protein-protein interaction databases

STRINGi203122.Sde_0573.

Structurei

3D structure databases

ProteinModelPortaliQ21N92.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini46 – 473AamyInterPro annotationAdd BLAST428

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4107T9C. Bacteria.
COG0366. LUCA.
HOGENOMiHOG000273912.
KOiK01176.
OMAiKDWTALD.
OrthoDBiPOG091H07J7.

Family and domain databases

Gene3Di3.20.20.80. 2 hits.
InterProiIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 2 hits.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.

Sequencei

Sequence statusi: Complete.

Q21N92-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYRYVLGVKP SFLLFWLLMA APSFAAKPDG KQKAIDPFWN NAIVYFLLTD
60 70 80 90 100
RFANGDTSND RNFDRAQDGA VLRNFMGGDI KGITQKIRSG YFTALGVEVL
110 120 130 140 150
WMTPVVEQIH GYWDEDWGRS YPFHGYWPKD WTSVDPNFGT ETDLKEMIAT
160 170 180 190 200
AHAYGIRVLA DVIINHTGLK TKVDVAWPQD WIRTEPTCEW HSYIHNVTCA
210 220 230 240 250
LAPSLTDVRT ESNKPVALPE FLLEKWRNEG REKQELAELD AFFERTNLPR
260 270 280 290 300
APQNYIVKWL TDWVREYGID GFRVDTAKHV EAEIWQVLKV EASTAFNEWK
310 320 330 340 350
AKNPNALPDE KDFFMIGEVM HFGVNGFKNT PAGTRNYDYG DKQVDFFNYG
360 370 380 390 400
FDSLINMGFA THASDSMETI FSTYSKELHQ GPLQGVGILN YVVSHDDPEP
410 420 430 440 450
HDKEHTKPYE TALKLMLAPG AVQIYYGDEL ARNLIVEGAV GDATWRSFMN
460 470 480 490 500
WQDIATVETQ LLLQHWQKLG TFRKHHMAVG AGIHKIRSNK PYIFSRVLHD
510 520 530 540 550
ATHADKVLVG IELNKGEKVL PTYSIFNNGD VVKDYYSNTL VTVEGGKVVL
560
NTPYEIVLLG EYHAIN
Length:566
Mass (Da):64,568
Last modified:April 18, 2006 - v1
Checksum:iF1232359422CB09C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000282 Genomic DNA. Translation: ABD79837.1.
RefSeqiWP_011467058.1. NC_007912.1.

Genome annotation databases

EnsemblBacteriaiABD79837; ABD79837; Sde_0573.
KEGGisde:Sde_0573.
PATRICi23399853. VBISacDeg56404_0631.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000282 Genomic DNA. Translation: ABD79837.1.
RefSeqiWP_011467058.1. NC_007912.1.

3D structure databases

ProteinModelPortaliQ21N92.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi203122.Sde_0573.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABD79837; ABD79837; Sde_0573.
KEGGisde:Sde_0573.
PATRICi23399853. VBISacDeg56404_0631.

Phylogenomic databases

eggNOGiENOG4107T9C. Bacteria.
COG0366. LUCA.
HOGENOMiHOG000273912.
KOiK01176.
OMAiKDWTALD.
OrthoDBiPOG091H07J7.

Family and domain databases

Gene3Di3.20.20.80. 2 hits.
InterProiIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 2 hits.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.
ProtoNetiSearch...

Entry informationi

Entry nameiQ21N92_SACD2
AccessioniPrimary (citable) accession number: Q21N92
Entry historyi
Integrated into UniProtKB/TrEMBL: April 18, 2006
Last sequence update: April 18, 2006
Last modified: November 2, 2016
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.