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Q21LC3 (Q21LC3_SACD2) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 46. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
2-dehydro-3-deoxyphosphooctonate aldolase HAMAP MF_00056
EC=2.5.1.55 HAMAP MF_00056
Alternative name(s):
3-deoxy-D-manno-octulosonic acid 8-phosphate synthase HAMAP MF_00056
KDO-8-phosphate synthase HAMAP MF_00056
Phospho-2-dehydro-3-deoxyoctonate aldolase HAMAP MF_00056
Gene names
Name:kdsA HAMAP MF_00056
Ordered Locus Names:Sde_1244
OrganismSaccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) [Complete proteome] [HAMAP] EMBL ABD80506.1
Taxonomic identifier203122 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Alteromonadaceae › Saccharophagus

Protein attributes

Sequence length283 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Phosphoenolpyruvate + D-arabinose 5-phosphate + H2O = 2-dehydro-3-deoxy-D-octonate 8-phosphate + phosphate. HAMAP MF_00056

Pathway

Bacterial outer membrane biogenesis; lipopolysaccharide biosynthesis. HAMAP MF_00056

Carbohydrate biosynthesis; 3-deoxy-D-manno-octulosonate biosynthesis; 3-deoxy-D-manno-octulosonate from D-ribulose 5-phosphate: step 2/3. HAMAP MF_00056

Subcellular location

Cytoplasm By similarity HAMAP MF_00056.

Sequence similarities

Belongs to the KdsA family. HAMAP MF_00056

Ontologies

Keywords
   Biological processLipopolysaccharide biosynthesis HAMAP MF_00056
   Cellular componentCytoplasm HAMAP MF_00056
   Molecular functionTransferase HAMAP MF_00056
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processketo-3-deoxy-D-manno-octulosonic acid biosynthetic process

Inferred from electronic annotation. Source: HAMAP

   Cellular componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular function3-deoxy-8-phosphooctulonate synthase activity

Inferred from electronic annotation. Source: HAMAP

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q21LC3 [UniParc].

Last modified April 18, 2006. Version 1.
Checksum: C583B35F12D9EB1B

FASTA28330,567
        10         20         30         40         50         60 
MQDKIIKVGN IDVANNKPFT LFGGMNVLES KDLALRTAEA YVNVTQKLGI PYVFKASFDK 

        70         80         90        100        110        120 
ANRSSINSYR GPGMEEGLRI FQAVKDEFGV PIITDVHECD QAAPVAEVVD VIQLPAFLAR 

       130        140        150        160        170        180 
QTDLVKAMAA TNAVINVKKP QFLSPGQMKN IVEKFAESGN EKVILCERGA CMGYDNLVVD 

       190        200        210        220        230        240 
MLGFRTMKEV SGGLPVIFDV THSLQCRDPL GAASGGRRHQ TAELGRAGIA VGIAGLFLEA 

       250        260        270        280 
HPNPAEAKCD GPSALPLEQL EAFLTQMKTV DDVIKGLPPL DIR

« Hide

References

[1]"Complete genome sequence of the complex carbohydrate-degrading marine bacterium, Saccharophagus degradans strain 2-40 T."
Weiner R.M., Taylor L.E. II, Henrissat B., Hauser L., Land M., Coutinho P.M., Rancurel C., Saunders E.H., Longmire A.G., Zhang H., Bayer E.A., Gilbert H.J., Larimer F., Zhulin I.B., Ekborg N.A., Lamed R., Richardson P.M., Borovok I., Hutcheson S.
PLoS Genet. 4:E1000087-E1000087(2008) [PubMed: 18516288] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000282 Genomic DNA. Translation: ABD80506.1.
RefSeqYP_526718.1. NC_007912.1.

3D structure databases

ProteinModelPortalQ21LC3.
SMRQ21LC3. Positions 1-281.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ21LC3.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID3968205.
GenomeReviewsGene locus Sde_1244 in contig CP000282_GR.
KEGGsde:Sde_1244.
NMPDRfig|203122.1.peg.3573.
PATRIC23401345. VBISacDeg56404_1364.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2877.
HOGENOMHBG575990.
OMAQLILCDR.
PhylomeDBQ21LC3.
ProtClustDBPRK05198.

Enzyme and pathway databases

BioCycSDEG203122:SDE_1244-MONOMER.

Family and domain databases

HAMAPMF_00056. KDO8P_synth.
[Tree]
InterProIPR013785. Aldolase_TIM.
IPR006218. DAHP1/KDSA.
IPR006269. KDO8P_synthase.
[Graphical view]
Gene3DG3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KOK01627.
PANTHERPTHR21057:SF2. KDO8P_synthase. 1 hit.
PfamPF00793. DAHP_synth_1. 1 hit.
[Graphical view]
TIGRFAMsTIGR01362. KDO8P_synth. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ21LC3_SACD2
AccessionPrimary (citable) accession number: Q21LC3
Entry history
Integrated into UniProtKB/TrEMBL: April 18, 2006
Last sequence update: April 18, 2006
Last modified: January 25, 2012
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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