Q21K69 (Q21K69_SACD2) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative rhamnogalacturonan lyase EMBL ABD80910.1

Gene names

Name:	rgl11A EMBL ABD80910.1
Ordered Locus Names:	Sde_1650

Organism

Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) [Complete proteome] [HAMAP] EMBL ABD80910.1

Taxonomic identifier

203122 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Alteromonadaceae › Saccharophagus

Protein attributes

Sequence length	914 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Lyase EMBL ABD80910.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro lyase activity Inferred from electronic annotation. Source: UniProtKB-KW polysaccharide binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q21K69 [UniParc]. Last modified April 18, 2006. Version 1. Checksum: 206A51C84F152BB2	FASTA	914	97,613
	10 20 30 40 50 60 MSALTRPKFG AHTKLFHAIK HALTPVIFLG AAAFPLAAHS QYNMENLDRG LVAIDRKDGS 70 80 90 100 110 120 VLVSWRWLGQ EPDNTSFNVY RNGTLLTSSP LTNKTNFVDT SGNPNANYAV EAIVNGASQS 130 140 150 160 170 180 LATTHVWSDI YRTIPLQRPP GGTTPDGVAY TYSPNDISAA DLDGDGGYEL IVKWDPSNAK 190 200 210 220 230 240 DNSQSGYTGN VYLDAYEISG EFMWRIDLGR NIRAGAHYTQ FLAFDFDSDG KAEVAVKTAD 250 260 270 280 290 300 ATKDSQGVVI GDSNADYRNS AGYVLSGPEY LTMFEGQTGR ALNTVNYVPA RGSVSSWGDN 310 320 330 340 350 360 YGNRVDRFLG GVAYLDGQNP SLIMSRGYYT RTVVAAWDWR NGQLSQRWVF DSNTSGNSSY 370 380 390 400 410 420 AGQGAHSLTI GDVDADGKQE IVFGAMTIDD NGTGLNNTRL GHGDALHLSD MDPSNPGLEV 430 440 450 460 470 480 FMVHECPSCY GEHGIEMHDA ATGQILWSHP GDYIDIGRGV AMDIDPRYAG YEAWASRGGL 490 500 510 520 530 540 YSAKGETISS TRPSQINFAA WWDGDLLREI LDNNYINKWN YTASSTTRLL SAGNYGAASN 550 560 570 580 590 600 NGTKATPGLS ADILGDWREE VVWRNSNNQE LMVFTTPHES EYRLRTLMHD PQYRTAIAWQ 610 620 630 640 650 660 NVGYNQPPHP SYFLGAGMTT PNQPHITIVG EGTVQPPAPT GDAIQENATG FCGYEGTIDS 670 680 690 700 710 720 NHSGYTGAGF TNTTNATGAG INWNLHASTA GTYRLSMRYA NGSTARGAVL NVETTGNSYP 730 740 750 760 770 780 MAFAPTSTWT NWQEEYVDAH LNAGYNSIRL EANQAAGLPN LDAIYLADGL TAAACGQTSS 790 800 810 820 830 840 SSSSSSSSSS SSSSSSSSSS SSSSSSSSSS SGGTTAGLAC ANGSTDTWGT GFVLNGFQVE 850 860 870 880 890 900 NEGQQATNNW QVTLQFDQPV NITNAWGVNV ETTGTTVVAT SVGYNSHLNP GQSASFGMQG 910 TSATAVSNPL CSAQ

References

[1]

"Complete genome sequence of the complex carbohydrate-degrading marine bacterium, Saccharophagus degradans strain 2-40 T." Weiner R.M., Taylor L.E. II, Henrissat B., Hauser L., Land M., Coutinho P.M., Rancurel C., Saunders E.H., Longmire A.G., Zhang H., Bayer E.A., Gilbert H.J., Larimer F., Zhulin I.B., Ekborg N.A., Lamed R., Richardson P.M., Borovok I., Hutcheson S. PLoS Genet. 4:E1000087-E1000087(2008) [PubMed: 18516288] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000282 Genomic DNA. Translation: ABD80910.1.
RefSeq	YP_527122.1. NC_007912.1.
3D structure databases
ProteinModelPortal	Q21K69.
SMR	Q21K69. Positions 40-627.
ModBase	Search...
Protein-protein interaction databases
STRING	Q21K69.
Protein family/group databases
CAZy	CBM2. Carbohydrate-Binding Module Family 2. CBM35. Carbohydrate-Binding Module Family 35. PL11. Polysaccharide Lyase Family 11.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3965166.
GenomeReviews	Gene locus Sde_1650 in contig CP000282_GR.
KEGG	sde:Sde_1650.
NMPDR	fig|203122.1.peg.632.
PATRIC	23402231. VBISacDeg56404_1798.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	NOG04883.
HOGENOM	HBG425203.
OMA	WRIDLGR.
ProtClustDB	CLSK761863.
Enzyme and pathway databases
BioCyc	SDEG203122:SDE_1650-MONOMER.
Family and domain databases
InterPro	IPR008965. Carb-bd_dom. IPR012291. CBD_carb-bd_dom. IPR001919. Cellulose-bd_dom_fam2_bac. IPR005084. CMB_fam6. IPR008979. Galactose-bd-like. [Graphical view]
Gene3D	G3DSA:2.60.40.290. CBD_carb_bd. 1 hit.
Pfam	PF00553. CBM_2. 1 hit. [Graphical view]
SMART	SM00637. CBD_II. 1 hit. [Graphical view]
SUPFAM	SSF49384. Cellul_bind. 1 hit. SSF49785. Gal_bind_like. 1 hit.
PROSITE	PS51173. CBM2. 1 hit. PS51175. CBM6. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q21K69_SACD2

Accession

Primary (citable) accession number: Q21K69

Entry history

Integrated into UniProtKB/TrEMBL:	April 18, 2006
Last sequence update:	April 18, 2006
Last modified:	January 25, 2012
This is version 41 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)