Q21FJ0 (Q21FJ0_SACD2) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative alginate lyase EMBL ABD82539.1

Gene names

Name:	alg17A EMBL ABD82539.1
Ordered Locus Names:	Sde_3284

Organism

Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) [Complete proteome] [HAMAP] EMBL ABD82539.1

Taxonomic identifier

203122 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Alteromonadaceae › Saccharophagus

Protein attributes

Sequence length	736 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Lyase EMBL ABD82539.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	alginic acid catabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	periplasmic space Inferred from electronic annotation. Source: InterPro
Molecular function	poly(beta-D-mannuronate) lyase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q21FJ0 [UniParc]. Last modified April 18, 2006. Version 1. Checksum: 500D22ED19B8DB80	FASTA	736	81,582
	10 20 30 40 50 60 MLSVNTIKNT LLAAVLVSVP ATAQVSGNGH PNLIVTEQDV ANIAASWESY DAYAEQLNAD 70 80 90 100 110 120 KTNLDAFMAE GVVVPMPKDA GGGYTHEQHK RNYKAIRNAG FLYQVTGDEK YLTFAKDLLL 130 140 150 160 170 180 AYAKMYPSLG EHPNRKEQSP GRLFWQSLNE AVWLVYSIQG YDAIIDGLAA EEKQEIESGV 190 200 210 220 230 240 FLPMAKFLSV ESPETFNKIH NHGTWAVAAV GMTGYVLGND ELVEISLMGL DKTGKAGFMK 250 260 270 280 290 300 QLDKLFSPDG YYTEGPYYQR YALMPFIWFA KAIETNEPER KIFEYRNNIL LKAVYTTIDL 310 320 330 340 350 360 SYAGYFFPIN DALKDKGIDT VELVHALAIV YSITGDNTLL DIAQEQGRIS LTGDGLKVAK 370 380 390 400 410 420 AVGEGLTQPY NYRSILLGDG ADGDQGALSI HRLGEGHNHM ALVAKNTSQG MGHGHFDKLN 430 440 450 460 470 480 WLLYDNGNEI VTDYGAARYL NVEAKYGGHY LAENNTWAKQ TIAHNTLVVN EQSHFYGDVT 490 500 510 520 530 540 TADLHHPEVL SFYSGEDYQL SSAKEANAYD GVEFVRSMLL VNVPSLEHPI VVDVLNVSAD 550 560 570 580 590 600 KASTFDLPLY FNGQIIDFSF KVKDNKNVMK MLGKRNGYQH LWLRNTAPVG DASERATWIL 610 620 630 640 650 660 DDRFYSYAFV TSTPSKKQNV LIAELGANDP NYNLRQQQVL IRRVEKAKQA SFVSVLEPHG 670 680 690 700 710 720 KYDGSLETTS GAYSNVKSVK HVSENGKDVV VVDLKDGSNV VVALSYNANS EQVHKVNAGE 730 EAIEWKGFSS VVVRRK

References

[1]

"Complete genome sequence of the complex carbohydrate-degrading marine bacterium, Saccharophagus degradans strain 2-40 T." Weiner R.M., Taylor L.E. II, Henrissat B., Hauser L., Land M., Coutinho P.M., Rancurel C., Saunders E.H., Longmire A.G., Zhang H., Bayer E.A., Gilbert H.J., Larimer F., Zhulin I.B., Ekborg N.A., Lamed R., Richardson P.M., Borovok I., Hutcheson S. PLoS Genet. 4:E1000087-E1000087(2008) [PubMed: 18516288] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000282 Genomic DNA. Translation: ABD82539.1.
RefSeq	YP_528751.1. NC_007912.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	Q21FJ0.
Protein family/group databases
CAZy	PL17. Polysaccharide Lyase Family 17.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3965776.
GenomeReviews	Gene locus Sde_3284 in contig CP000282_GR.
KEGG	sde:Sde_3284.
NMPDR	fig|203122.1.peg.2010.
PATRIC	23405757. VBISacDeg56404_3539.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	NOG45022.
HOGENOM	HBG742331.
OMA	NGYQHLW.
ProtClustDB	CLSK769500.
Enzyme and pathway databases
BioCyc	SDEG203122:SDE_3284-MONOMER.
Family and domain databases
InterPro	IPR008397. Alginate_lyase_dom. IPR008929. Chondroitin_lyas. IPR012480. Hepar_II_III. [Graphical view]
Gene3D	G3DSA:1.50.10.110. Alginate_lyase. 1 hit.
Pfam	PF05426. Alginate_lyase. 1 hit. PF07940. Hepar_II_III. 1 hit. [Graphical view]
SUPFAM	SSF48230. Chondroitin_lyas. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q21FJ0_SACD2

Accession

Primary (citable) accession number: Q21FJ0

Entry history

Integrated into UniProtKB/TrEMBL:	April 18, 2006
Last sequence update:	April 18, 2006
Last modified:	December 14, 2011
This is version 30 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)