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Q21DU2 (Q21DU2_SACD2) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 52. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=3.2.1.23 EMBL ABD83137.1
Gene names
Name:gal2A EMBL ABD83137.1
Ordered Locus Names:Sde_3882 EMBL ABD83137.1
OrganismSaccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) [Complete proteome] [HAMAP] EMBL ABD83137.1
Taxonomic identifier203122 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeSaccharophagus

Protein attributes

Sequence length961 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionGlycosidase EMBL ABD83137.1
Hydrolase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functionbeta-galactosidase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q21DU2 [UniParc].

Last modified April 18, 2006. Version 1.
Checksum: 476DD5D66B894F1F

FASTA961107,051
        10         20         30         40         50         60 
MKISLYYHGR VVGRLVLLLA VLFGSSAAFA AEQEDGRERL SLNRGWYFHL GDVPMAPIKG 

        70         80         90        100        110        120 
HSESYMNAKA GNAPGPAGRE FDDSEWRRLD LPHDWAVEGP FDPNENISQG YRPRGISWYR 

       130        140        150        160        170        180 
RYLRVEESDR GRYFELQFDA IATHATVWVN GNVVKRNYSG YNASYIDITP YIRYGDAMNT 

       190        200        210        220        230        240 
IAVKVDATQM EGWWYEGAGM YRHTWLVKAN PVHIVTDGLH ATPRLESETL EGGKWSIPVE 

       250        260        270        280        290        300 
VTLNNSGENL QTVTVEVTVT APNGKQVAKQ SGNVTVPVLG EAVAKLPVTI QSPALWSHEQ 

       310        320        330        340        350        360 
TNLYRVNAVV KHGKRVIDEI ALSTGFRTVR FDSQQGFFLN DKHVKLQGVC IHQDHAGVGV 

       370        380        390        400        410        420 
AVPTSIWQYR LRRLKELGVN AIRFSHNAPA VEVLDLVDSM GFLVMDENRN FNPSPDYMQQ 

       430        440        450        460        470        480 
LEWMVRRDRH HPGIILWSVF NEEPVQASEV GYQMVRRMVA AVKALDDTRP VTAAMNGGFF 

       490        500        510        520        530        540 
SDLNVSHAVD VLGANYQVPD YDRFHAARPE MPFTSSEDTS AFMMRGEFTT DYDKNLIASY 

       550        560        570        580        590        600 
DEDFAFWGNS HRDAWQAVAT RDYVAGAFVW TGFDYRGEPT PLAWPSVSSF FGIMDLNGFA 

       610        620        630        640        650        660 
KTAYYIHRAQ WVKDEPQAYL APHWNWAGKE GQIIPVLVMA NVDKVQLLLN GKSLGEQVVD 

       670        680        690        700        710        720 
PFQMNTFDVA YQPGKLEVIG YSSGKEVVRN SVETTGKAVA VQLVPDRKAL VGDGFDAMPI 

       730        740        750        760        770        780 
TVQAVDAKGR VVPTDNSLIH FEISGAGQSI GHGNGNPNSH EDEKGATRHL FNGLAQLIVQ 

       790        800        810        820        830        840 
SHYESSGNIT VKASSPGLKT AKVSIPVKKV AAVPYVASQT APNVHLSDWR TSPVASQRPD 

       850        860        870        880        890        900 
PTQKVADNDM NSWGWGQPPF MSQAKGETAP ARYRLYRTNF TPRKNLARGD GELFIGDVVG 

       910        920        930        940        950        960 
RVEVWLNDEL LYKKDNVRKQ NLRLPIPKGE GNRELTFLLE DEGQDNAVIG GPVIVQPKGK 


K 

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References

[1]"Complete genome sequence of the complex carbohydrate-degrading marine bacterium, Saccharophagus degradans strain 2-40 T."
Weiner R.M., Taylor L.E.II., Henrissat B., Hauser L., Land M., Coutinho P.M., Rancurel C., Saunders E.H., Longmire A.G., Zhang H., Bayer E.A., Gilbert H.J., Larimer F., Zhulin I.B., Ekborg N.A., Lamed R., Richardson P.M., Borovok I., Hutcheson S.
PLoS Genet. 4:E1000087-E1000087(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 2-40 / ATCC 43961 / DSM 17024.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000282 Genomic DNA. Translation: ABD83137.1.
RefSeqYP_529349.1. NC_007912.1.

3D structure databases

ProteinModelPortalQ21DU2.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING203122.Sde_3882.

Protein family/group databases

CAZyGH2. Glycoside Hydrolase Family 2.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABD83137; ABD83137; Sde_3882.
GeneID3967107.
KEGGsde:Sde_3882.
PATRIC23407035. VBISacDeg56404_4178.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3250.
HOGENOMHOG000022809.
KOK01190.
OMAEEGWFYE.
OrthoDBEOG680WZ9.

Enzyme and pathway databases

BioCycSDEG203122:GI2M-3932-MONOMER.

Family and domain databases

Gene3D2.60.120.260. 1 hit.
2.60.40.320. 1 hit.
3.20.20.80. 1 hit.
InterProIPR008979. Galactose-bd-like.
IPR013812. Glyco_hydro_2/20_Ig-like.
IPR006102. Glyco_hydro_2_Ig-like.
IPR006104. Glyco_hydro_2_N.
IPR006103. Glyco_hydro_2_TIM.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PfamPF00703. Glyco_hydro_2. 1 hit.
PF02836. Glyco_hydro_2_C. 1 hit.
PF02837. Glyco_hydro_2_N. 1 hit.
[Graphical view]
SUPFAMSSF49303. SSF49303. 1 hit.
SSF49785. SSF49785. 1 hit.
SSF51445. SSF51445. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ21DU2_SACD2
AccessionPrimary (citable) accession number: Q21DU2
Entry history
Integrated into UniProtKB/TrEMBL: April 18, 2006
Last sequence update: April 18, 2006
Last modified: May 14, 2014
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)