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Protein

60S ribosomal protein L28

Gene

rpl-28

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L28
Gene namesi
Name:rpl-28
ORF Names:R11D1.8
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome V

Organism-specific databases

WormBaseiR11D1.8; CE06313; WBGene00004442; rpl-28.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00001223932 – 12660S ribosomal protein L28Add BLAST125

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei2N-acetylserine1 Publication1

Keywords - PTMi

Acetylation

Proteomic databases

EPDiQ21930.
PaxDbiQ21930.
PeptideAtlasiQ21930.
PRIDEiQ21930.

Expressioni

Gene expression databases

BgeeiWBGene00004442.

Interactioni

Protein-protein interaction databases

BioGridi44759. 2 interactors.
DIPiDIP-24374N.
IntActiQ21930. 1 interactor.
MINTiMINT-1095802.
STRINGi6239.R11D1.8.1.

Structurei

3D structure databases

ProteinModelPortaliQ21930.
SMRiQ21930.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3412. Eukaryota.
ENOG4111T32. LUCA.
HOGENOMiHOG000200513.
InParanoidiQ21930.
KOiK02903.
OMAiMSDALVW.
OrthoDBiEOG091G0W22.
PhylomeDBiQ21930.

Family and domain databases

InterProiView protein in InterPro
IPR029004. L28e/Mak16.
IPR002672. Ribosomal_L28e.
PANTHERiPTHR10544. PTHR10544. 1 hit.
PfamiView protein in Pfam
PF01778. Ribosomal_L28e. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q21930-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDALVWQVI RNNSAFLRTQ RGIGKRFSTE KFNLKKVNSP KYSGLANKHA
60 70 80 90 100
IDVSAAAKGV VVSTKNEKGR PAKAVTTSTL SKTPVASVRR LAKNAGFNKF
110 120
NKLAQRRAAA IVRSQVKKAK VQKTDA
Length:126
Mass (Da):13,725
Last modified:January 23, 2007 - v3
Checksum:i075EDF6CD3F56E68
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z75547 Genomic DNA. Translation: CAA99898.1.
PIRiT24181.
RefSeqiNP_506180.1. NM_073779.5.
UniGeneiCel.6544.

Genome annotation databases

EnsemblMetazoaiR11D1.8.1; R11D1.8.1; WBGene00004442.
R11D1.8.2; R11D1.8.2; WBGene00004442.
GeneIDi179739.
KEGGicel:CELE_R11D1.8.
UCSCiR11D1.8.5. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z75547 Genomic DNA. Translation: CAA99898.1.
PIRiT24181.
RefSeqiNP_506180.1. NM_073779.5.
UniGeneiCel.6544.

3D structure databases

ProteinModelPortaliQ21930.
SMRiQ21930.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi44759. 2 interactors.
DIPiDIP-24374N.
IntActiQ21930. 1 interactor.
MINTiMINT-1095802.
STRINGi6239.R11D1.8.1.

Proteomic databases

EPDiQ21930.
PaxDbiQ21930.
PeptideAtlasiQ21930.
PRIDEiQ21930.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiR11D1.8.1; R11D1.8.1; WBGene00004442.
R11D1.8.2; R11D1.8.2; WBGene00004442.
GeneIDi179739.
KEGGicel:CELE_R11D1.8.
UCSCiR11D1.8.5. c. elegans.

Organism-specific databases

CTDi179739.
WormBaseiR11D1.8; CE06313; WBGene00004442; rpl-28.

Phylogenomic databases

eggNOGiKOG3412. Eukaryota.
ENOG4111T32. LUCA.
HOGENOMiHOG000200513.
InParanoidiQ21930.
KOiK02903.
OMAiMSDALVW.
OrthoDBiEOG091G0W22.
PhylomeDBiQ21930.

Miscellaneous databases

PROiPR:Q21930.

Gene expression databases

BgeeiWBGene00004442.

Family and domain databases

InterProiView protein in InterPro
IPR029004. L28e/Mak16.
IPR002672. Ribosomal_L28e.
PANTHERiPTHR10544. PTHR10544. 1 hit.
PfamiView protein in Pfam
PF01778. Ribosomal_L28e. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRL28_CAEEL
AccessioniPrimary (citable) accession number: Q21930
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 25, 2002
Last sequence update: January 23, 2007
Last modified: June 7, 2017
This is version 109 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.