Protein R07E5.8, partially confirmed by transcript evidence - Caenorhabditis elegans

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Unreviewed, UniProtKB/TrEMBL Q21829 (Q21829_CAEEL)

Last modified February 9, 2010. Version 60. History...

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Names and origin · Protein attributes · Ontologies · Sequences · References · Cross-references · Entry information

Names and origin

Protein names

Submitted name:
Protein R07E5.8, partially confirmed by transcript evidence EMBL CAA83623.1

Gene names

Name:	cku-80 WormBase WBGene00000520
ORF Names:	R07E5.8 EMBL CAA83623.1

Organism

Caenorhabditis elegans [Complete proteome] EMBL CAA83623.1

Taxonomic identifier

Taxonomic lineage

Eukaryota › Metazoa › Nematoda › Chromadorea › Rhabditida › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis

Protein attributes

Sequence length	728 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level.

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	double-strand break repair via nonhomologous end joining Inferred from electronic annotation. Source: InterPro
Cellular component	nucleus Inferred from electronic annotation. Source: InterPro
Molecular function	ATP-dependent DNA helicase activity Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

Q21829-1 [UniParc].

Last modified November 1, 1996. Version 1.
Checksum: A26940BE6349BD9E
Show »

728

82,323

        10         20         30         40         50         60 
MPPKKVSPGI TVILIDAGSN MSVKDTETGK SAFENAINAA DWIVSRKLFS KDPELFSVMA 

        70         80         90        100        110        120 
YNLDPKEYKT EVGGQTFNGV QCQNEKFTPA SFDHLKFITK ELQQNTEMID PNFFKGVLGA 

       130        140        150        160        170        180 
VAVLKDQIES YPNPSGITLI VLTNGLNENI RQENFDLLVE AVSESNADLM IIGIDENPEY 

       190        200        210        220        230        240 
PASRVAELAE TLEGRTYTFQ NVAKMLSTFQ ARQKSERKYN KMWDIAPGIH LPVIFALKSE 

       250        260        270        280        290        300 
KSTALLKFKN ADSEGNEMVR LEQMHVETDE VAPKDEFKSP VLEEKPKFQK NFKPVENIKT 

       310        320        330        340        350        360 
MHGSEILNFL KSIINASGYN FGKSVIMMDP EYLKEKYNDH NFNEGQTGGV LKLIQFTKRA 

       370        380        390        400        410        420 
NILDSYLLDA SAKTVLPALN SPKSGATKAT VSLIEAMLSL RVAAICRYTF HAKSHVQLIA 

       430        440        450        460        470        480 
LLPHQDEETG VFYLRSVKLP FSDDMRTLKF PKFSFDEEDE DLNKPTVAQL SAVDDLIDCM 

       490        500        510        520        530        540 
QLQEDEISSL VEGGMSDPKL QMQCHFLKSL VLHPNDTFEN HSNRTNQILD QIMAPKRRVE 

       550        560        570        580        590        600 
AEHPEIFQKL GREFNLQPIQ KTKRERVTVE PEDLQTMISE WTEKKQNMTQ PDEVDDGASQ 

       610        620        630        640        650        660 
KKKKKPNAKK LTRKEEVQMD IMEDGGASRV CSKILEMISN TCKFQPNGAV TEFFTLLVNE 

       670        680        690        700        710        720 
LNVIRSVFVE NSKCDEFNEL LKKLKDEEDF EPFAEVLSEE KSCNPIDSSE VSMSEVSVAN 


AAEFWEED

References

[1]	"Genome sequence of the nematode C. elegans: a platform for investigating biology." The C. elegans sequencing consortium Science 282:2012-2018(1998) [PubMed: 9851916] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Bristol N2.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	Z32683 Genomic DNA. Translation: CAA83623.1.
PIR	S43606.
RefSeq	NP_497899.1.
UniGene	Cel.10673
3D structure databases
ModBase	Search...
Protein-protein interaction databases
DIP	DIP-27363N.
IntAct	Q21829. 5 interactions.
STRING	Q21829.
Genome annotation databases
Ensembl	R07E5.8.1; R07E5.8.1; R07E5.8; Caenorhabditis elegans. [Genome view] R07E5.8.2; R07E5.8.2; R07E5.8; Caenorhabditis elegans. [Genome view]
GeneID	175578.
KEGG	cel:R07E5.8.
UCSC	R07E5.8.1. c. elegans.
Organism-specific databases
CTD	175578.
WormBase	WBGene00000520. cku-80.
WormPep	R07E5.8. CE00660. [WorfDB]
Phylogenomic databases
eggNOG	meNOG12978.
HOGENOM	HBG381705.
InParanoid	Q21829.
OMA	FNEGQTG.
PhylomeDB	Q21829.
Gene expression databases
ArrayExpress	Q21829.
Family and domain databases
InterPro	IPR006164. DNA_helicase_ATP-dep_Ku. IPR005160. Ku_C. IPR005161. Ku_N. IPR014893. Ku_PK_bind. IPR016194. SPOC-like. IPR002035. VWF_A. [Graphical view]
Gene3D	G3DSA:1.10.1600.10. Ku_C. 1 hit.
Pfam	PF02735. Ku. 1 hit. PF03731. Ku_N. 1 hit. PF08785. Ku_PK_bind. 1 hit. [Graphical view]
SMART	SM00559. Ku78. 1 hit. SM00327. VWA. 1 hit. [Graphical view]
ProtoNet	Search...
Other Resources
NextBio	888748.

Entry information

Entry name

Q21829_CAEEL

Accession

Primary (citable) accession number: Q21829

Entry history

Integrated into UniProtKB/TrEMBL:	November 1, 1996
Last sequence update:	November 1, 1996
Last modified:	February 9, 2010
This is version 60 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Names and origin · Protein attributes · Ontologies · Sequences · References · Cross-references · Entry information