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Protein
Submitted name:

GAlactosidase/N-Acetylgalactosaminidase

Gene

gana-1

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • carbohydrate metabolic process Source: InterPro
  • glycoside catabolic process Source: WormBase
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotationSAAS annotation, Hydrolase

Enzyme and pathway databases

ReactomeiR-CEL-1660662. Glycosphingolipid metabolism.

Protein family/group databases

CAZyiGH27. Glycoside Hydrolase Family 27.

Names & Taxonomyi

Protein namesi
Submitted name:
GAlactosidase/N-AcetylgalactosaminidaseImported
Gene namesi
Name:gana-1Imported
ORF Names:CELE_R07B7.11Imported, R07B7.11Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome V

Organism-specific databases

WormBaseiR07B7.11; CE06273; WBGene00011095; gana-1.

Subcellular locationi

GO - Cellular componenti

  • cytoplasm Source: WormBase
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2121Sequence analysisAdd
BLAST
Chaini22 – 451430Sequence analysisPRO_5004199691Add
BLAST

Keywords - PTMi

Disulfide bondUniRule annotationSAAS annotation

Proteomic databases

EPDiQ21801.
PaxDbiQ21801.
PRIDEiQ21801.

Interactioni

Subunit structurei

Homodimer.UniRule annotation

Protein-protein interaction databases

STRINGi6239.R07B7.11.

Structurei

3D structure databases

ProteinModelPortaliQ21801.
SMRiQ21801. Positions 16-401.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 27 family.UniRule annotationSAAS annotation

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiKOG2366. Eukaryota.
ENOG410XPF1. LUCA.
GeneTreeiENSGT00390000008751.
HOGENOMiHOG000161224.
InParanoidiQ21801.
OMAiCINEQLY.
OrthoDBiEOG7F24SV.
PhylomeDBiQ21801.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.70. 1 hit.
InterProiIPR013785. Aldolase_TIM.
IPR002241. Glyco_hydro_27.
IPR000111. Glyco_hydro_27/36_CS.
IPR013780. Glyco_hydro_b.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PfamiPF16499. Melibiase_2. 1 hit.
[Graphical view]
PRINTSiPR00740. GLHYDRLASE27.
SUPFAMiSSF51445. SSF51445. 1 hit.
PROSITEiPS00512. ALPHA_GALACTOSIDASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q21801-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRLLLPLLFC VGAFCLDNGL GRTPPMGWMS WTAFYCEIDC VKHPTGCINE
60 70 80 90 100
QLYKDMADQL VSGGYDKVGY KSVHIDDCWS EMERDSHGIL VANKTRFPSG
110 120 130 140 150
MKALAKYMHD RGLKFGIYED YGTKTCGGYP GSYKHEKVDA QTFAAWDVDY
160 170 180 190 200
LKLDGCNIDQ AMMPIGYPLF EKELNETGRP IMYSCSWPAY LIDHPELVNY
210 220 230 240 250
NLIGKYCNTW RNFDDINSSW KSIISIISYY DKMQDKHIPT HGPGKWHDPD
260 270 280 290 300
MLVIGNKGIT LDMSISQFTV WCIWSAPLIM SNDLRIIGDS FKDVLKNKEA
310 320 330 340 350
IKINQDPLGI MGRLIKNSTD IGVYVKQITP SKGDKKSFAF AYLNRNEKEG
360 370 380 390 400
YKRIEIQLAS IGLTDPAGYY VHDIWSHVDL GLLRSGDSIV VSIAPAGSVF
410 420 430 440 450
FRADLASLHQ PKGKRRYKFD NSNVVYEFER EQSQLGRFDF GDYLRTNRVQ

F
Length:451
Mass (Da):51,424
Last modified:November 1, 1996 - v1
Checksum:iF7BB2B0D5D5C6419
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284605 Genomic DNA. Translation: CAB00120.1.
PIRiT24018.
RefSeqiNP_506031.1. NM_073630.5.
UniGeneiCel.2869.

Genome annotation databases

EnsemblMetazoaiR07B7.11; R07B7.11; WBGene00011095.
GeneIDi179660.
KEGGicel:CELE_R07B7.11.
UCSCiR07B7.11. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284605 Genomic DNA. Translation: CAB00120.1.
PIRiT24018.
RefSeqiNP_506031.1. NM_073630.5.
UniGeneiCel.2869.

3D structure databases

ProteinModelPortaliQ21801.
SMRiQ21801. Positions 16-401.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.R07B7.11.

Protein family/group databases

CAZyiGH27. Glycoside Hydrolase Family 27.

Proteomic databases

EPDiQ21801.
PaxDbiQ21801.
PRIDEiQ21801.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiR07B7.11; R07B7.11; WBGene00011095.
GeneIDi179660.
KEGGicel:CELE_R07B7.11.
UCSCiR07B7.11. c. elegans.

Organism-specific databases

CTDi179660.
WormBaseiR07B7.11; CE06273; WBGene00011095; gana-1.

Phylogenomic databases

eggNOGiKOG2366. Eukaryota.
ENOG410XPF1. LUCA.
GeneTreeiENSGT00390000008751.
HOGENOMiHOG000161224.
InParanoidiQ21801.
OMAiCINEQLY.
OrthoDBiEOG7F24SV.
PhylomeDBiQ21801.

Enzyme and pathway databases

ReactomeiR-CEL-1660662. Glycosphingolipid metabolism.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.70. 1 hit.
InterProiIPR013785. Aldolase_TIM.
IPR002241. Glyco_hydro_27.
IPR000111. Glyco_hydro_27/36_CS.
IPR013780. Glyco_hydro_b.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PfamiPF16499. Melibiase_2. 1 hit.
[Graphical view]
PRINTSiPR00740. GLHYDRLASE27.
SUPFAMiSSF51445. SSF51445. 1 hit.
PROSITEiPS00512. ALPHA_GALACTOSIDASE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiQ21801_CAEEL
AccessioniPrimary (citable) accession number: Q21801
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: July 6, 2016
This is version 123 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.