Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit - Rhodopseudomonas palustris (strain BisB18)

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Q216E8 (Q216E8_RHOPB) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 48. History...

Clusters with 100%, 90%, 50% identity |

Third-party data

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Names·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

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Names·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Submitted name:
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit EMBL ABD87738.1
EC=4.1.1.39 EMBL ABD87738.1

Gene names

Ordered Locus Names:

RPC_2184

Organism

Rhodopseudomonas palustris (strain BisB18) [Complete proteome] [HAMAP] EMBL ABD87738.1

Taxonomic identifier

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Rhodopseudomonas ›

Protein attributes

Sequence length	368 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the RuBisCO large chain family. RuleBase RU004228

Ontologies

Keywords
Molecular function	Lyase EMBL ABD87738.1
Technical term	3D-structure PDB 3QFW Complete proteome
Gene Ontology (GO)
Biological_process	carbon fixation Inferred from electronic annotation. Source: InterPro
Molecular_function	magnesium ion binding Inferred from electronic annotation. Source: InterPro ribulose-bisphosphate carboxylase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

Q216E8 [UniParc].

Last modified April 18, 2006. Version 1.
Checksum: 4D92F5366524779C
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368

38,412

        10         20         30         40         50         60 
MTEPRIVATY HIASDAERIE QRALALAIEQ SVECPLEAIG DPAIVANIVG RVEDVAELQP 

        70         80         90        100        110        120 
GRYAVRIGLA AATAPAEPGQ LLNMLFGNSS IQPDIALADV ELPAHYLTAF GGPRVGLAGI 

       130        140        150        160        170        180 
RTLTGAQSRA LTASALKPQG LSPAALASIA HQLALGGVDL IKDDHGLADQ AFSPFAERAA 

       190        200        210        220        230        240 
AVGKAVREAN AARGGRTLYA PNISGTLDDM RRQLGVIRDE GIGAVLVAPM IVGVSNFHAI 

       250        260        270        280        290        300 
VKEAAGLVVV AHPAMAGAAK IAAPLLLGRL FRLFGADATV FPNYGGRFAY STASCLALAQ 

       310        320        330        340        350        360 
AARDPFGKLN ACIPTPAGGI MLQRVNELLR FYGQDVMLLI GGSLLASRER LTEQASRFVN 


KVADYGQR

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete sequence of Rhodopseudomonas palustris BisB18." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. Richardson P. Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: BisB18.
[2]	"Crystal structure of Rubisco-like protein from Rhodopseudomonas palustris." Fedorov A.A., Fedorov E.V., Gerlt J.A., Burley S.K., Almo S.C. Submitted (JAN-2011) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.79 ANGSTROMS) OF 2-368.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

CP000301 Genomic DNA. Translation: ABD87738.1.

RefSeq

YP_532057.1. NC_007925.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
3QFW	X-ray	1.79	A/B	2-368	[»]

ProteinModelPortal

ModBase

Protein-protein interaction databases

STRING

316056.RPC_2184.

Protocols and materials databases

StructuralBiologyKnowledgebase

Genome annotation databases

EnsemblBacteria

ABD87738; ABD87738; RPC_2184.

GeneID

KEGG

PATRIC

23269078. VBIRhoPal29154_2238.

Organism-specific databases

CMR

Phylogenomic databases

eggNOG

HOGENOM

KO

OMA

ProtClustDB

Enzyme and pathway databases

BioCyc

RPAL316056:GH3E-2257-MONOMER.

Family and domain databases

Gene3D

3.20.20.110. 1 hit.

InterPro

IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view]

Pfam

PF00016. RuBisCO_large. 1 hit.
[Graphical view]

SUPFAM

SSF51649. RuBisCO_large. 1 hit.
SSF54966. RuBisCO_large. 1 hit.

ProtoNet

Entry information

Entry name

Q216E8_RHOPB

Accession

Primary (citable) accession number: Q216E8

Entry history

Integrated into UniProtKB/TrEMBL:	April 18, 2006
Last sequence update:	April 18, 2006
Last modified:	May 1, 2013
This is version 48 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

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Names·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info