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Q216E8 (Q216E8_RHOPB) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 55. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
EC=4.1.1.39 EMBL ABD87738.1
Gene names
Ordered Locus Names:RPC_2184 EMBL ABD87738.1
OrganismRhodopseudomonas palustris (strain BisB18) [Complete proteome] [HAMAP] EMBL ABD87738.1
Taxonomic identifier316056 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas

Protein attributes

Sequence length368 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the RuBisCO large chain family. RuleBase RU004228

Ontologies

Keywords
   Molecular functionLyase EMBL ABD87738.1
   Technical term3D-structure PDB 3QFW
Complete proteome
Gene Ontology (GO)
   Biological_processcarbon fixation

Inferred from electronic annotation. Source: InterPro

   Molecular_functionmagnesium ion binding

Inferred from electronic annotation. Source: InterPro

ribulose-bisphosphate carboxylase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region127 – 1293Sulfate 1 binding PDB 3QFW

Sites

Binding site2921Sulfate 2 PDB 3QFW
Binding site3261Sulfate 3 PDB 3QFW
Binding site3301Sulfate 3 PDB 3QFW

Sequences

Sequence LengthMass (Da)Tools
Q216E8 [UniParc].

Last modified April 18, 2006. Version 1.
Checksum: 4D92F5366524779C

FASTA36838,412
        10         20         30         40         50         60 
MTEPRIVATY HIASDAERIE QRALALAIEQ SVECPLEAIG DPAIVANIVG RVEDVAELQP 

        70         80         90        100        110        120 
GRYAVRIGLA AATAPAEPGQ LLNMLFGNSS IQPDIALADV ELPAHYLTAF GGPRVGLAGI 

       130        140        150        160        170        180 
RTLTGAQSRA LTASALKPQG LSPAALASIA HQLALGGVDL IKDDHGLADQ AFSPFAERAA 

       190        200        210        220        230        240 
AVGKAVREAN AARGGRTLYA PNISGTLDDM RRQLGVIRDE GIGAVLVAPM IVGVSNFHAI 

       250        260        270        280        290        300 
VKEAAGLVVV AHPAMAGAAK IAAPLLLGRL FRLFGADATV FPNYGGRFAY STASCLALAQ 

       310        320        330        340        350        360 
AARDPFGKLN ACIPTPAGGI MLQRVNELLR FYGQDVMLLI GGSLLASRER LTEQASRFVN 


KVADYGQR 

« Hide

References

« Hide 'large scale' references
[1]"Complete sequence of Rhodopseudomonas palustris BisB18."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Pelletier D.A., Kyrpides N., Anderson I., Oda Y., Harwood C.S., Richardson P.
Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: BisB18 EMBL ABD87738.1.
[2]"Crystal structure of Rubisco-like protein from Rhodopseudomonas palustris."
Fedorov A.A., Fedorov E.V., Gerlt J.A., Burley S.K., Almo S.C.
Submitted (JAN-2011) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.79 ANGSTROMS) OF 2-368 IN COMPLEX WITH SULFATE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000301 Genomic DNA. Translation: ABD87738.1.
RefSeqYP_532057.1. NC_007925.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3QFWX-ray1.79A/B2-368[»]
ProteinModelPortalQ216E8.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING316056.RPC_2184.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABD87738; ABD87738; RPC_2184.
GeneID3969166.
KEGGrpc:RPC_2184.
PATRIC23269078. VBIRhoPal29154_2238.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1850.
HOGENOMHOG000230274.
KOK01601.
OMAEPGQLLN.
OrthoDBEOG6MM1J2.

Enzyme and pathway databases

BioCycRPAL316056:GH3E-2209-MONOMER.

Family and domain databases

Gene3D3.20.20.110. 1 hit.
InterProIPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view]
PfamPF00016. RuBisCO_large. 1 hit.
[Graphical view]
SUPFAMSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ216E8_RHOPB
AccessionPrimary (citable) accession number: Q216E8
Entry history
Integrated into UniProtKB/TrEMBL: April 18, 2006
Last sequence update: April 18, 2006
Last modified: June 11, 2014
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)