Q215A8 (Q215A8_RHOPB) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
2-dehydro-3-deoxyphosphooctonate aldolase HAMAP MF_00056
EC=2.5.1.55 HAMAP MF_00056

Alternative name(s):
3-deoxy-D-manno-octulosonic acid 8-phosphate synthase HAMAP MF_00056
KDO-8-phosphate synthase HAMAP MF_00056
Phospho-2-dehydro-3-deoxyoctonate aldolase HAMAP MF_00056

Gene names

Name:	kdsA HAMAP MF_00056
Ordered Locus Names:	RPC_2477

Organism

Rhodopseudomonas palustris (strain BisB18) [Complete proteome] [HAMAP]

Taxonomic identifier

316056 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Rhodopseudomonas

Protein attributes

Sequence length	296 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	Phosphoenolpyruvate + D-arabinose 5-phosphate + H2O = 2-dehydro-3-deoxy-D-octonate 8-phosphate + phosphate. HAMAP MF_00056 SAAS SAAS006269
Pathway	Bacterial outer membrane biogenesis; lipopolysaccharide biosynthesis. HAMAP MF_00056 SAAS SAAS006269 Carbohydrate biosynthesis; 3-deoxy-D-manno-octulosonate biosynthesis; 3-deoxy-D-manno-octulosonate from D-ribulose 5-phosphate: step 2/3. HAMAP MF_00056 SAAS SAAS006269
Subcellular location	Cytoplasm By similarity HAMAP MF_00056 SAAS SAAS006269.
Sequence similarities	Belongs to the KdsA family. HAMAP MF_00056

Ontologies

Keywords
Biological process	Lipopolysaccharide biosynthesis HAMAP MF_00056 SAAS SAAS006269
Cellular component	Cytoplasm HAMAP MF_00056 SAAS SAAS006269
Molecular function	Transferase HAMAP MF_00056 SAAS SAAS006269 EMBL ABD88028.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	keto-3-deoxy-D-manno-octulosonic acid biosynthetic process Inferred from electronic annotation. Source: HAMAP
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	3-deoxy-8-phosphooctulonate synthase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q215A8 [UniParc]. Last modified April 18, 2006. Version 1. Checksum: EE4D11746ABB1B22	FASTA	296	31,323
	10 20 30 40 50 60 MIRQIFRFDE AKDAALTAPI AAAPIVTAGS VRFGNALPLA VIAGPCQLES RAHALETASA 70 80 90 100 110 120 LKEIAQKLGI GLVYKTSFDK ANRTSATSQR GLGLEQALPI FAEIRESFGL PVLTDVHESE 130 140 150 160 170 180 QCARAAEAVD ILQIPAFLCR QTDLLLAAAA TGKVVNVKKG QFLAPWDMAN VVQKLTSAGN 190 200 210 220 230 240 ANVLVTERGV SFGYNTLVSD MRALPILART TGAPVIFDAT HSVQQPGGKG TSSGGEREFV 250 260 270 280 290 PVLARAAVAV GVAGVFIETH PDPDHAPSDG PNMVPLREFE ALMQRLMQFD ALAKAR

References

[1]

"Complete sequence of Rhodopseudomonas palustris BisB18." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. , Hauser L., Pelletier D.A., Kyrpides N., Anderson I., Oda Y., Harwood C.S., Richardson P. Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: BisB18.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000301 Genomic DNA. Translation: ABD88028.1.
RefSeq	YP_532347.1. NC_007925.1.
3D structure databases
ProteinModelPortal	Q215A8.
SMR	Q215A8. Positions 38-294.
ModBase	Search...
Protein-protein interaction databases
STRING	Q215A8.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3971234.
GenomeReviews	Gene locus RPC_2477 in contig CP000301_GR.
KEGG	rpc:RPC_2477.
PATRIC	23269694. VBIRhoPal29154_2543.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG2877.
HOGENOM	HBG575990.
OMA	HENEQCA.
ProtClustDB	PRK05198.
Enzyme and pathway databases
BioCyc	RPAL316056:RPC_2477-MONOMER.
Family and domain databases
HAMAP	MF_00056. KDO8P_synth. [Tree]
InterPro	IPR013785. Aldolase_TIM. IPR006218. DAHP1/KDSA. IPR006269. KDO8P_synthase. [Graphical view]
Gene3D	G3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KO	K01627.
PANTHER	PTHR21057:SF2. KDO8P_synthase. 1 hit.
Pfam	PF00793. DAHP_synth_1. 1 hit. [Graphical view]
TIGRFAMs	TIGR01362. KDO8P_synth. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q215A8_RHOPB

Accession

Primary (citable) accession number: Q215A8

Entry history

Integrated into UniProtKB/TrEMBL:	April 18, 2006
Last sequence update:	April 18, 2006
Last modified:	January 25, 2012
This is version 45 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)