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Q210H1 (GLGB_RHOPB) Reviewed, UniProtKB/Swiss-Prot

Last modified June 11, 2014. Version 69. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
1,4-alpha-glucan branching enzyme GlgB

EC=2.4.1.18
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase
Alpha-(1->4)-glucan branching enzyme
Glycogen branching enzyme
Short name=BE
Gene names
Name:glgB
Ordered Locus Names:RPC_3680
OrganismRhodopseudomonas palustris (strain BisB18) [Complete proteome] [HAMAP]
Taxonomic identifier316056 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas

Protein attributes

Sequence length716 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position By similarity. HAMAP-Rule MF_00685

Catalytic activity

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain. HAMAP-Rule MF_00685

Pathway

Glycan biosynthesis; glycogen biosynthesis. HAMAP-Rule MF_00685

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00685

Sequence similarities

Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 7167161,4-alpha-glucan branching enzyme GlgB HAMAP-Rule MF_00685
PRO_0000260689

Sites

Active site3991Nucleophile By similarity
Active site4521Proton donor By similarity

Sequences

Sequence LengthMass (Da)Tools
Q210H1 [UniParc].

Last modified April 18, 2006. Version 1.
Checksum: F7C9F880C6C8FB37

FASTA71681,247
        10         20         30         40         50         60 
MIANLPEEAY AIVEGRHADP FRYLGPHQEN DRTVVRAFLP EASMVDAVDE HGGTATLERV 

        70         80         90        100        110        120 
HDAGLFVGLL PNGSGRYQLR ARFGETTVDL DDPYRFPPIL TDFDLYLLGE GTHQRLYDKL 

       130        140        150        160        170        180 
GAHPLTLDGV DGIAFVVLAP NAQRVSVVGD FNFWNPRRHP MRVRGSGYWE LFVPRALAGD 

       190        200        210        220        230        240 
HYKFDIIGPH GQQLPLKSDP LAFAAEMRPD TASVVVDPAR LSHPRPAPPA INALTSPMSI 

       250        260        270        280        290        300 
YEVHLGSWRR KDDNQWLSYR ELAEVLPAYV RDLGFTHVEF LPVNEHPFDG SWGYQPTGLF 

       310        320        330        340        350        360 
APTSRFGTPE DFIALIDACH RENIGVLLDW VPGHFPDDPH GLANFDGTAL YEHANPLQGR 

       370        380        390        400        410        420 
HMDWGTLIYN YGRTEVVNFL VSNALFWLER YAVDGLRVDA VASMLYLDYS RPAGGWIPNK 

       430        440        450        460        470        480 
FGGRENLEAI DFLRRFNTEV YAKFPHATTA AEESTAWPQV SRPVEYGGLG FGYKWNMGWM 

       490        500        510        520        530        540 
HDTLDYISKD PIYRKHHHGE ILFGLQYAFS ENFILPLSHD EVVHGKRSLI GRMPGDAWQR 

       550        560        570        580        590        600 
FANLRAYYSF MFAHPGKKLM FMGCEFAQER EWNHDRSLDW HLLEQPEHQG IQALIRDLNG 

       610        620        630        640        650        660 
LYRRLPALHQ LDCDGYGFEW IVTDDADRNV FAWIRKGNDA RARCLVVANF SPSVYHDYRV 

       670        680        690        700        710 
RVPFPGKWRE VLNSDSAHYG GSNVGNIGEV QTLDQLVPEL SLSLPPLGVI FLTPED 

« Hide

References

[1]"Complete sequence of Rhodopseudomonas palustris BisB18."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Pelletier D.A., Kyrpides N., Anderson I., Oda Y., Harwood C.S., Richardson P.
Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: BisB18.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000301 Genomic DNA. Translation: ABD89215.1.
RefSeqYP_533534.1. NC_007925.1.

3D structure databases

ProteinModelPortalQ210H1.
SMRQ210H1. Positions 112-715.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING316056.RPC_3680.

Protein family/group databases

CAZyCBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABD89215; ABD89215; RPC_3680.
GeneID3971653.
KEGGrpc:RPC_3680.
PATRIC23272178. VBIRhoPal29154_3767.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0296.
HOGENOMHOG000283037.
KOK00700.
OMAAKLLFMG.
OrthoDBEOG6JX7GT.

Enzyme and pathway databases

BioCycRPAL316056:GH3E-3732-MONOMER.
UniPathwayUPA00164.

Family and domain databases

Gene3D2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPMF_00685. GlgB.
InterProIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFPIRSF000463. GlgB. 1 hit.
SUPFAMSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 1 hit.
TIGRFAMsTIGR01515. branching_enzym. 1 hit.
ProtoNetSearch...

Entry information

Entry nameGLGB_RHOPB
AccessionPrimary (citable) accession number: Q210H1
Entry history
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: April 18, 2006
Last modified: June 11, 2014
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

PATHWAY comments

Index of metabolic and biosynthesis pathways

Glycosyl hydrolases

Classification of glycosyl hydrolase families and list of entries