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Protein
Submitted name:

ATP dependent DNA ligase

Gene

RPC_3685

Organism
Rhodopseudomonas palustris (strain BisB18)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRPAL316056:GH3E-3737-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:RPC_3685Imported
OrganismiRhodopseudomonas palustris (strain BisB18)Imported
Taxonomic identifieri316056 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
ProteomesiUP000001948: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi316056.RPC_3685.

Structurei

3D structure databases

ProteinModelPortaliQ210G6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiLELHPWN.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q210G6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MARSHRGFPV TLDNLKLYRK KRDFEKTAEP SGEAKVAPSQ RRRFVIQKHD
60 70 80 90 100
ATRLHYDLRL EFDGVFKSWA VTRGPSLDPH DKRLAVEVED HPLDYGDFEG
110 120 130 140 150
TIPEGQYGGG TVQLWDRGYW EADDPERGFK TGDLKFTLHG EKLHGSWVLV
160 170 180 190 200
RMRNDRSGGK RTNWLLIKHR DDDAREGDAN DILAQEASVA SGRAMEEIAA
210 220 230 240 250
GKGRAPKPFM VKAARAKADA VWDSNRGLAA EARGEREAPA KRRAASRPAK
260 270 280 290 300
QAKAKQAKAK PAKRAKAKAV AAMPDFIAPQ LCSSVERPPG GAGWGHEIKF
310 320 330 340 350
DGYRVQLRVE GGQATLKTRK GLDWTRKFRA IADQAAALPD AIIDTEIVAL
360 370 380 390 400
DAAGAPDFAA LQAALSDENT DNLICFAFDL LFAEGEDLRA LPLSERKQRL
410 420 430 440 450
QEMLEQARGR RKQSVIRYVE HFESGGDAIL QSACKMSLEG IVSKKLDAPY
460 470 480 490 500
RSGRSESWTK AKCRAGHEVV IGGWKSNAGK FRSLMVGVHR DDHLAYVGIV
510 520 530 540 550
GTGFGQVMVK RIMPALKANA SNENPFGGKT APKKTAEVHW LKPELVAEIE
560 570 580 590 600
FAGFTGAGMV RQAAFKGLRQ DKPAEEVEAE TPKKTAVAEP GRGKRGGKAK
610 620 630 640 650
AGAAKPAASK PAAAKPGHPA QVMGVLISKP DKQLWPDASD GEPVTKLDLA
660 670 680 690 700
RYFEAVGDWM LPHIKGRPCS IVRAPDGIKG EQFFQRHAMP GTSNLLELVS
710 720 730 740 750
VSGDRKPYLQ VDRVEGLAAV AQIGGLELHA WNCAPDAPDV PGRFVFDLDP
760 770 780 790 800
APDVAFSDVV AAAREMRERL TALGLESFCK TTGGKGLHVV TPLSKSKDNV
810 820 830 840 850
DWKQAKAFAQ AVCRQMAEDS PERYLLNMSK KLREGKIFLD YLRNDRMATA
860 870 880 890 900
VAVLSPRARD GATVSMPLTW PQVKGDLDPK RFTLRTVPGL LAKSKAWAGY
910 920
DEAATPLKAA IKRLASSGTT
Length:920
Mass (Da):100,502
Last modified:April 18, 2006 - v1
Checksum:i040B276810784EF6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000301 Genomic DNA. Translation: ABD89220.1.
RefSeqiYP_533539.2. NC_007925.1.

Genome annotation databases

EnsemblBacteriaiABD89220; ABD89220; RPC_3685.
GeneIDi3971658.
KEGGirpc:RPC_3685.
PATRICi23272188. VBIRhoPal29154_3772.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000301 Genomic DNA. Translation: ABD89220.1.
RefSeqiYP_533539.2. NC_007925.1.

3D structure databases

ProteinModelPortaliQ210G6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi316056.RPC_3685.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABD89220; ABD89220; RPC_3685.
GeneIDi3971658.
KEGGirpc:RPC_3685.
PATRICi23272188. VBIRhoPal29154_3772.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiLELHPWN.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciRPAL316056:GH3E-3737-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BisB18Imported.

Entry informationi

Entry nameiQ210G6_RHOPB
AccessioniPrimary (citable) accession number: Q210G6
Entry historyi
Integrated into UniProtKB/TrEMBL: April 18, 2006
Last sequence update: April 18, 2006
Last modified: January 7, 2015
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.