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Q210G6 (Q210G6_RHOPB) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 48. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
ATP dependent DNA ligase EMBL ABD89220.1
Gene names
Ordered Locus Names:RPC_3685
OrganismRhodopseudomonas palustris (strain BisB18) [Complete proteome] [HAMAP] EMBL ABD89220.1
Taxonomic identifier316056 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Rhodopseudomonas ›

Protein attributes

Sequence length920 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ABD89220.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q210G6 [UniParc].

Last modified April 18, 2006. Version 1.
Checksum: 040B276810784EF6

FASTA920100,502
        10         20         30         40         50         60 
MARSHRGFPV TLDNLKLYRK KRDFEKTAEP SGEAKVAPSQ RRRFVIQKHD ATRLHYDLRL 

        70         80         90        100        110        120 
EFDGVFKSWA VTRGPSLDPH DKRLAVEVED HPLDYGDFEG TIPEGQYGGG TVQLWDRGYW 

       130        140        150        160        170        180 
EADDPERGFK TGDLKFTLHG EKLHGSWVLV RMRNDRSGGK RTNWLLIKHR DDDAREGDAN 

       190        200        210        220        230        240 
DILAQEASVA SGRAMEEIAA GKGRAPKPFM VKAARAKADA VWDSNRGLAA EARGEREAPA 

       250        260        270        280        290        300 
KRRAASRPAK QAKAKQAKAK PAKRAKAKAV AAMPDFIAPQ LCSSVERPPG GAGWGHEIKF 

       310        320        330        340        350        360 
DGYRVQLRVE GGQATLKTRK GLDWTRKFRA IADQAAALPD AIIDTEIVAL DAAGAPDFAA 

       370        380        390        400        410        420 
LQAALSDENT DNLICFAFDL LFAEGEDLRA LPLSERKQRL QEMLEQARGR RKQSVIRYVE 

       430        440        450        460        470        480 
HFESGGDAIL QSACKMSLEG IVSKKLDAPY RSGRSESWTK AKCRAGHEVV IGGWKSNAGK 

       490        500        510        520        530        540 
FRSLMVGVHR DDHLAYVGIV GTGFGQVMVK RIMPALKANA SNENPFGGKT APKKTAEVHW 

       550        560        570        580        590        600 
LKPELVAEIE FAGFTGAGMV RQAAFKGLRQ DKPAEEVEAE TPKKTAVAEP GRGKRGGKAK 

       610        620        630        640        650        660 
AGAAKPAASK PAAAKPGHPA QVMGVLISKP DKQLWPDASD GEPVTKLDLA RYFEAVGDWM 

       670        680        690        700        710        720 
LPHIKGRPCS IVRAPDGIKG EQFFQRHAMP GTSNLLELVS VSGDRKPYLQ VDRVEGLAAV 

       730        740        750        760        770        780 
AQIGGLELHA WNCAPDAPDV PGRFVFDLDP APDVAFSDVV AAAREMRERL TALGLESFCK 

       790        800        810        820        830        840 
TTGGKGLHVV TPLSKSKDNV DWKQAKAFAQ AVCRQMAEDS PERYLLNMSK KLREGKIFLD 

       850        860        870        880        890        900 
YLRNDRMATA VAVLSPRARD GATVSMPLTW PQVKGDLDPK RFTLRTVPGL LAKSKAWAGY 

       910        920 
DEAATPLKAA IKRLASSGTT

« Hide

References

[1]"Complete sequence of Rhodopseudomonas palustris BisB18."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Pelletier D.A., Kyrpides N., Anderson I., Oda Y., Harwood C.S., Richardson P.
Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: BisB18.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000301 Genomic DNA. Translation: ABD89220.1.
RefSeqYP_533539.2. NC_007925.1.

3D structure databases

ProteinModelPortalQ210G6.
ModBaseSearch...

Protein-protein interaction databases

STRING316056.RPC_3685.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABD89220; ABD89220; RPC_3685.
GeneID3971658.
KEGGrpc:RPC_3685.
PATRIC23272188. VBIRhoPal29154_3772.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMALVAECEF.
ProtClustDBPRK05972.

Enzyme and pathway databases

BioCycRPAL316056:GH3E-3758-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ210G6_RHOPB
AccessionPrimary (citable) accession number: Q210G6
Entry history
Integrated into UniProtKB/TrEMBL: April 18, 2006
Last sequence update: April 18, 2006
Last modified: May 1, 2013
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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