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Q20Z88 (Q20Z88_RHOPB) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 48. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Malate synthase G HAMAP MF_00641 RuleBase RU003572
EC=2.3.3.9 HAMAP MF_00641 RuleBase RU003572
Gene names
Name:glcB HAMAP MF_00641
Ordered Locus Names:RPC_4022
OrganismRhodopseudomonas palustris (strain BisB18) [Complete proteome] [HAMAP]
Taxonomic identifier316056 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Rhodopseudomonas

Protein attributes

Sequence length720 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Acetyl-CoA + H2O + glyoxylate = (S)-malate + CoA. HAMAP MF_00641 RuleBase RU003572 SAAS SAAS006253

Pathway

Carbohydrate metabolism; glyoxylate cycle; (S)-malate from isocitrate: step 2/2. HAMAP MF_00641 RuleBase RU003572 SAAS SAAS006253

Subunit structure

Monomer By similarity. HAMAP MF_00641 SAAS SAAS006253

Subcellular location

Cytoplasm By similarity HAMAP MF_00641 RuleBase RU003572.

Sequence similarities

Belongs to the malate synthase family. GlcB subfamily. HAMAP MF_00641 RuleBase RU003572

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site3381Proton acceptor By similarity HAMAP MF_00641
Active site6291Proton donor By similarity HAMAP MF_00641

Sequences

Sequence LengthMass (Da)Tools
Q20Z88 [UniParc].

Last modified April 18, 2006. Version 1.
Checksum: E8CB8EE3158F7F8F

FASTA72078,059
        10         20         30         40         50         60 
MNRIKAHGLQ IAPVLFDFIA KEAAPKTGID PDAFWAGLAG IVRDLAPKTR ELLALRDALQ 

        70         80         90        100        110        120 
LKIDDWHKAN KGKPWDIEAY TAFLKEIGYL LPEPATVEVE TTDVDEEIGK ICGPQLVVPL 

       130        140        150        160        170        180 
SNARYSLNAA NARWGSLYDA LYGTDAIPHD ASETGRGYNK ARGAKVIAKA KAFLDQAVPL 

       190        200        210        220        230        240 
ATASHTDVTS YSVIAGHLSV KLKSGNATAL KNAAQFAGFL GDAAAPTAIL LVNHGMHIEI 

       250        260        270        280        290        300 
KVDRSSVIGK DDAAGVADVI LESAVSTILD MEDSVAAVDA EDKVLIYRNV LGLMDGTLTA 

       310        320        330        340        350        360 
DFEKGGKTLT RALNGDRVYQ TVDGKGLTLH GRSLLLMRNV GHHMFTDAVL DESGAEIPEG 

       370        380        390        400        410        420 
FLDAAVAGLL AIHDLKGGSK TRNSRTGSVY IVKPKMHGPD EVALTVELFG RVEQMLGLAE 

       430        440        450        460        470        480 
NTMKVGIMDE ERRTTVNLKA CIQNASKRIV FINTGFLDRT GDEIHTSMEA GPMIRKNEMK 

       490        500        510        520        530        540 
AQPWIKAYED WNVDMGLIDG LPGHAQIGKG MWAAPDKMAD MLAQKVGHPQ AGATTAWVPS 

       550        560        570        580        590        600 
PTAATLHALH YHQVDVLKRQ QELKTGGPRA KLSDILTIPV SQSNWAPDDV RQEIDNNCQG 

       610        620        630        640        650        660 
ILGYVVRWID QGVGCSKVPD IHDVGLMEDR ATLRISSQHL ANWLHQGVIT KEQVMESLKR 

       670        680        690        700        710        720 
MAVVVDKQNE GDALYKPMAP GFDGVAFKAA CDLIFKGREQ PNGYTEFILT ARRREAKAAV

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References

[1]"Complete sequence of Rhodopseudomonas palustris BisB18."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Pelletier D.A., Kyrpides N., Anderson I., Oda Y., Harwood C.S., Richardson P.
Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: BisB18.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000301 Genomic DNA. Translation: ABD89548.1.
RefSeqYP_533867.1. NC_007925.1.

3D structure databases

ProteinModelPortalQ20Z88.
SMRQ20Z88. Positions 9-718.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ20Z88.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID3969212.
GenomeReviewsGene locus RPC_4022 in contig CP000301_GR.
KEGGrpc:RPC_4022.
PATRIC23272852. VBIRhoPal29154_4101.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2225.
HOGENOMHBG350005.
OMAPKMHGPD.
ProtClustDBPRK02999.

Enzyme and pathway databases

BioCycRPAL316056:RPC_4022-MONOMER.

Family and domain databases

HAMAPMF_00641. Malate_synth_G.
[Tree]
InterProIPR011076. Malate_synth-like.
IPR023310. Malate_synth_G_beta_sub_dom.
IPR001465. Malate_synthase.
IPR006253. Malate_synthG.
[Graphical view]
Gene3DG3DSA:2.170.170.11. Malate_synth_G_beta_sub_dom. 2 hits.
KOK01638.
PANTHERPTHR21631:SF1. Malate_synthase. 1 hit.
PfamPF01274. Malate_synthase. 1 hit.
[Graphical view]
SUPFAMSSF51645. Malat_synth_like. 1 hit.
TIGRFAMsTIGR01345. Malate_syn_G. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ20Z88_RHOPB
AccessionPrimary (citable) accession number: Q20Z88
Entry history
Integrated into UniProtKB/TrEMBL: April 18, 2006
Last sequence update: April 18, 2006
Last modified: December 14, 2011
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info