Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Beta-(1-->2)glucan export ATP-binding/permease protein NdvA

Gene

ndvA

Organism
Rhodopseudomonas palustris (strain BisB18)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Involved in beta-(1-->2)glucan export. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation (By similarity).By similarity

Catalytic activityi

ATP + H2O + beta-glucan(In) = ADP + phosphate + beta-glucan(Out).UniRule annotation

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi378 – 385ATPUniRule annotation8

GO - Molecular functioni

Keywordsi

Molecular functionHydrolase
Biological processSugar transport, Transport
LigandATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Beta-(1-->2)glucan export ATP-binding/permease protein NdvAUniRule annotation (EC:3.6.3.42UniRule annotation)
Gene namesi
Name:ndvAUniRule annotation
Ordered Locus Names:RPC_4072
OrganismiRhodopseudomonas palustris (strain BisB18)
Taxonomic identifieri316056 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
Proteomesi
  • UP000001948 Componenti: Chromosome

Subcellular locationi

Q20Z38:
  • Cell inner membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei22 – 42HelicalUniRule annotationAdd BLAST21
Transmembranei68 – 88HelicalUniRule annotationAdd BLAST21
Transmembranei146 – 166HelicalUniRule annotationAdd BLAST21
Transmembranei168 – 188HelicalUniRule annotationAdd BLAST21
Transmembranei238 – 258HelicalUniRule annotationAdd BLAST21
Transmembranei285 – 305HelicalUniRule annotationAdd BLAST21

GO - Cellular componenti

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002902541 – 604Beta-(1-->2)glucan export ATP-binding/permease protein NdvAAdd BLAST604

Interactioni

Subunit structurei

Homodimer.UniRule annotation

Protein-protein interaction databases

STRINGi316056.RPC_4072.

Structurei

3D structure databases

ProteinModelPortaliQ20Z38.
SMRiQ20Z38.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini21 – 311ABC transmembrane type-1UniRule annotationAdd BLAST291
Domaini345 – 579ABC transporterUniRule annotationAdd BLAST235

Domaini

In NdvA the ATP-binding domain (NBD) and the transmembrane domain (TMD) are fused.

Sequence similaritiesi

Belongs to the ABC transporter superfamily. Beta-(1-->2)glucan exporter (TC 3.A.1.108.1) family. [View classification]UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105BZ1. Bacteria.
COG1132. LUCA.
KOiK06147.
OMAiMPVLSWW.
OrthoDBiPOG091H00DB.

Family and domain databases

Gene3Di1.20.1560.10. 1 hit.
InterProiView protein in InterPro
IPR003593. AAA+_ATPase.
IPR011527. ABC1_TM_dom.
IPR036640. ABC1_TM_sf.
IPR017902. ABC_bGlucan_ATPase.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR027417. P-loop_NTPase.
PfamiView protein in Pfam
PF00664. ABC_membrane. 1 hit.
PF00005. ABC_tran. 1 hit.
SMARTiView protein in SMART
SM00382. AAA. 1 hit.
SUPFAMiSSF52540. SSF52540. 1 hit.
SSF90123. SSF90123. 2 hits.
PROSITEiView protein in PROSITE
PS50929. ABC_TM1F. 1 hit.
PS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 1 hit.
PS51317. NDVA. 1 hit.

Sequencei

Sequence statusi: Complete.

Q20Z38-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSMLRLYTRV LQLLGGEARL GWILAFANLL LAGAQFAEPV LFGRIVDVLS
60 70 80 90 100
GNLSTGALQT SVASPWPLLG AWVAFGLFTI LCSAAVALHA DRLAHRQRQA
110 120 130 140 150
ILTSYFEHIM QLPLTYHTGT HSGRLMKVML QGTDALWRLW LGFFREHFAA
160 170 180 190 200
ILSLVVLLPL ALYINWRLAI LLFILCVVFT VLTTLVVHKT YSMQGEVEEQ
210 220 230 240 250
YSDLSARASD ALGNVALVQS FVRIDAEVQG LRFVADRLLA LQMPVLSWWA
260 270 280 290 300
LVTVITRAST TITVLAIFTV GIALHEQGLT SVGEIVMFVS FATLLIQKLE
310 320 330 340 350
QVVSFINSVF MEAPRLQEFF NVLDAVPAVR DRPDAVDPER LQGLVEFKDV
360 370 380 390 400
SFSYDGKRPA VADLSFTARP GETIALVGAT GAGKSTAIAL LHRAFDPQSG
410 420 430 440 450
VIRIDGLDVR DLTLAGLRRN IGVVFQEALL FNRSIADNLR VGKPDATEEE
460 470 480 490 500
MRTAASRAQA LDFIERSEQK FDTNAGERGR MLSGGERQRL SIARALLKDP
510 520 530 540 550
PILILDEATS ALDAVTEAKV NLALDEVMKG RTTFVIAHRL STIRHATRIL
560 570 580 590 600
VFEAGRVIES GTFDELLARQ GHFAALARAQ FMVQETSRAN MAAPLEHAAS

AKIS
Length:604
Mass (Da):66,315
Last modified:April 18, 2006 - v1
Checksum:i5E1E39A76F1BFEED
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000301 Genomic DNA. Translation: ABD89598.1.
RefSeqiWP_011474479.1. NC_007925.1.

Genome annotation databases

EnsemblBacteriaiABD89598; ABD89598; RPC_4072.
KEGGirpc:RPC_4072.

Similar proteinsi

Entry informationi

Entry nameiNDVA_RHOPB
AccessioniPrimary (citable) accession number: Q20Z38
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 12, 2007
Last sequence update: April 18, 2006
Last modified: October 25, 2017
This is version 84 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families