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Q20Z21

- TYPH_RHOPB

UniProt

Q20Z21 - TYPH_RHOPB

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Protein

Putative thymidine phosphorylase

Gene
RPC_4089
Organism
Rhodopseudomonas palustris (strain BisB18)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

Thymidine + phosphate = thymine + 2-deoxy-alpha-D-ribose 1-phosphate.UniRule annotation

GO - Molecular functioni

  1. phosphorylase activity Source: InterPro
  2. thymidine phosphorylase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. pyrimidine nucleobase metabolic process Source: InterPro
  2. pyrimidine nucleoside metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Enzyme and pathway databases

BioCyciRPAL316056:GH3E-4145-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative thymidine phosphorylase (EC:2.4.2.4)
Alternative name(s):
TdRPase
Gene namesi
Ordered Locus Names:RPC_4089
OrganismiRhodopseudomonas palustris (strain BisB18)
Taxonomic identifieri316056 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
ProteomesiUP000001948: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 513513Putative thymidine phosphorylaseUniRule annotationPRO_0000314715Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi316056.RPC_4089.

Structurei

3D structure databases

ProteinModelPortaliQ20Z21.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0213.
HOGENOMiHOG000252767.
KOiK00758.
OMAiCLIWGGH.
OrthoDBiEOG61ZTGG.

Family and domain databases

Gene3Di3.40.1030.10. 1 hit.
3.90.1170.30. 1 hit.
HAMAPiMF_00703. Thymid_phosp_2.
InterProiIPR000312. Glycosyl_Trfase_fam3.
IPR017459. Glycosyl_Trfase_fam3_N_dom.
IPR013102. PYNP_C.
IPR000053. Pyrmidine_PPase.
IPR017872. Pyrmidine_PPase_CS.
IPR028579. Thym_Pase_Put.
IPR013466. Thymidine/AMP_Pase.
[Graphical view]
PANTHERiPTHR10515. PTHR10515. 1 hit.
PfamiPF02885. Glycos_trans_3N. 1 hit.
PF00591. Glycos_transf_3. 1 hit.
PF07831. PYNP_C. 1 hit.
[Graphical view]
PIRSFiPIRSF000478. TP_PyNP. 1 hit.
SMARTiSM00941. PYNP_C. 1 hit.
[Graphical view]
SUPFAMiSSF47648. SSF47648. 1 hit.
SSF52418. SSF52418. 1 hit.
SSF54680. SSF54680. 1 hit.
TIGRFAMsiTIGR02645. ARCH_P_rylase. 1 hit.
PROSITEiPS00647. THYMID_PHOSPHORYLASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q20Z21-1 [UniParc]FASTAAdd to Basket

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MTSADAPRPQ LKIRLIHLDT GRENVAVMSR RSKALRPEVF SGFSRVEIRR    50
NAKSVLATLL ITDDDALVGP DELGLAEPAF RRFGEPAGTF VTVSPATPPD 100
SLDAVRGKIQ GRTLSAAEIT AIVNDLTRYR YSDMEIAAFL IGAARFMTSD 150
ELLALVSAMA SVGTQLRWDR PIVVDKHCIG GIPGNRTSMI LVPIVAAHGL 200
TIPKTSSRAI TSPAGTADTM EVLARVDVSV AEMKEIVAAC NGCLIWGGHV 250
NLSPADDILI SVERPLCLDT REQMVASIMS KKLAAGSTHL LVDLPVGPTA 300
KVASALDAMR LRKLFEFVGD HFGIAVETIT TDGRQPIGNG IGPVLEAQDV 350
MAVLGNDPKA PADLREKSLR LAAHLLEYDP HLRGGAGYAR ARELLESGAA 400
LKQMQKIIDN QGPSTCHKDL GTLTAEVTAE RDGVVSAIDC LQLNRLARTA 450
GAPIDKGAGI RLFKKVGDRV EAGEPLYRIY AFDPAERELA VAAAKLACGY 500
TVDDAQTFRE QVM 513
Length:513
Mass (Da):54,925
Last modified:April 18, 2006 - v1
Checksum:iA97C3D79D65D8A8A
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000301 Genomic DNA. Translation: ABD89615.1.
RefSeqiYP_533934.1. NC_007925.1.

Genome annotation databases

EnsemblBacteriaiABD89615; ABD89615; RPC_4089.
GeneIDi3973178.
KEGGirpc:RPC_4089.
PATRICi23272990. VBIRhoPal29154_4170.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000301 Genomic DNA. Translation: ABD89615.1 .
RefSeqi YP_533934.1. NC_007925.1.

3D structure databases

ProteinModelPortali Q20Z21.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 316056.RPC_4089.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABD89615 ; ABD89615 ; RPC_4089 .
GeneIDi 3973178.
KEGGi rpc:RPC_4089.
PATRICi 23272990. VBIRhoPal29154_4170.

Phylogenomic databases

eggNOGi COG0213.
HOGENOMi HOG000252767.
KOi K00758.
OMAi CLIWGGH.
OrthoDBi EOG61ZTGG.

Enzyme and pathway databases

BioCyci RPAL316056:GH3E-4145-MONOMER.

Family and domain databases

Gene3Di 3.40.1030.10. 1 hit.
3.90.1170.30. 1 hit.
HAMAPi MF_00703. Thymid_phosp_2.
InterProi IPR000312. Glycosyl_Trfase_fam3.
IPR017459. Glycosyl_Trfase_fam3_N_dom.
IPR013102. PYNP_C.
IPR000053. Pyrmidine_PPase.
IPR017872. Pyrmidine_PPase_CS.
IPR028579. Thym_Pase_Put.
IPR013466. Thymidine/AMP_Pase.
[Graphical view ]
PANTHERi PTHR10515. PTHR10515. 1 hit.
Pfami PF02885. Glycos_trans_3N. 1 hit.
PF00591. Glycos_transf_3. 1 hit.
PF07831. PYNP_C. 1 hit.
[Graphical view ]
PIRSFi PIRSF000478. TP_PyNP. 1 hit.
SMARTi SM00941. PYNP_C. 1 hit.
[Graphical view ]
SUPFAMi SSF47648. SSF47648. 1 hit.
SSF52418. SSF52418. 1 hit.
SSF54680. SSF54680. 1 hit.
TIGRFAMsi TIGR02645. ARCH_P_rylase. 1 hit.
PROSITEi PS00647. THYMID_PHOSPHORYLASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BisB18.

Entry informationi

Entry nameiTYPH_RHOPB
AccessioniPrimary (citable) accession number: Q20Z21
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: April 18, 2006
Last modified: May 14, 2014
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi