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Q20Z21 (TYPH_RHOPB) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 55. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Putative thymidine phosphorylase

EC=2.4.2.4
Alternative name(s):
TdRPase
Gene names
Ordered Locus Names:RPC_4089
OrganismRhodopseudomonas palustris (strain BisB18) [Complete proteome] [HAMAP]
Taxonomic identifier316056 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas

Protein attributes

Sequence length513 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Thymidine + phosphate = thymine + 2-deoxy-alpha-D-ribose 1-phosphate. HAMAP-Rule MF_00703

Sequence similarities

Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family. Type 2 subfamily.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 513513Putative thymidine phosphorylase HAMAP-Rule MF_00703
PRO_0000314715

Sequences

Sequence LengthMass (Da)Tools
Q20Z21 [UniParc].

Last modified April 18, 2006. Version 1.
Checksum: A97C3D79D65D8A8A

FASTA51354,925
        10         20         30         40         50         60 
MTSADAPRPQ LKIRLIHLDT GRENVAVMSR RSKALRPEVF SGFSRVEIRR NAKSVLATLL 

        70         80         90        100        110        120 
ITDDDALVGP DELGLAEPAF RRFGEPAGTF VTVSPATPPD SLDAVRGKIQ GRTLSAAEIT 

       130        140        150        160        170        180 
AIVNDLTRYR YSDMEIAAFL IGAARFMTSD ELLALVSAMA SVGTQLRWDR PIVVDKHCIG 

       190        200        210        220        230        240 
GIPGNRTSMI LVPIVAAHGL TIPKTSSRAI TSPAGTADTM EVLARVDVSV AEMKEIVAAC 

       250        260        270        280        290        300 
NGCLIWGGHV NLSPADDILI SVERPLCLDT REQMVASIMS KKLAAGSTHL LVDLPVGPTA 

       310        320        330        340        350        360 
KVASALDAMR LRKLFEFVGD HFGIAVETIT TDGRQPIGNG IGPVLEAQDV MAVLGNDPKA 

       370        380        390        400        410        420 
PADLREKSLR LAAHLLEYDP HLRGGAGYAR ARELLESGAA LKQMQKIIDN QGPSTCHKDL 

       430        440        450        460        470        480 
GTLTAEVTAE RDGVVSAIDC LQLNRLARTA GAPIDKGAGI RLFKKVGDRV EAGEPLYRIY 

       490        500        510 
AFDPAERELA VAAAKLACGY TVDDAQTFRE QVM 

« Hide

References

[1]"Complete sequence of Rhodopseudomonas palustris BisB18."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Pelletier D.A., Kyrpides N., Anderson I., Oda Y., Harwood C.S., Richardson P.
Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: BisB18.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000301 Genomic DNA. Translation: ABD89615.1.
RefSeqYP_533934.1. NC_007925.1.

3D structure databases

ProteinModelPortalQ20Z21.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING316056.RPC_4089.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABD89615; ABD89615; RPC_4089.
GeneID3973178.
KEGGrpc:RPC_4089.
PATRIC23272990. VBIRhoPal29154_4170.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0213.
HOGENOMHOG000252767.
KOK00758.
OMACLIWGGH.
OrthoDBEOG61ZTGG.

Enzyme and pathway databases

BioCycRPAL316056:GH3E-4145-MONOMER.

Family and domain databases

Gene3D3.40.1030.10. 1 hit.
3.90.1170.30. 1 hit.
HAMAPMF_00703. Thymid_phosp_2.
InterProIPR000312. Glycosyl_Trfase_fam3.
IPR017459. Glycosyl_Trfase_fam3_N_dom.
IPR013102. PYNP_C.
IPR000053. Pyrmidine_PPase.
IPR017872. Pyrmidine_PPase_CS.
IPR028579. Thym_Pase_Put.
IPR013466. Thymidine/AMP_Pase.
[Graphical view]
PANTHERPTHR10515. PTHR10515. 1 hit.
PfamPF02885. Glycos_trans_3N. 1 hit.
PF00591. Glycos_transf_3. 1 hit.
PF07831. PYNP_C. 1 hit.
[Graphical view]
PIRSFPIRSF000478. TP_PyNP. 1 hit.
SMARTSM00941. PYNP_C. 1 hit.
[Graphical view]
SUPFAMSSF47648. SSF47648. 1 hit.
SSF52418. SSF52418. 1 hit.
SSF54680. SSF54680. 1 hit.
TIGRFAMsTIGR02645. ARCH_P_rylase. 1 hit.
PROSITEPS00647. THYMID_PHOSPHORYLASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameTYPH_RHOPB
AccessionPrimary (citable) accession number: Q20Z21
Entry history
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: April 18, 2006
Last modified: May 14, 2014
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families