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Q20Z21

- TYPH_RHOPB

UniProt

Q20Z21 - TYPH_RHOPB

Protein

Putative thymidine phosphorylase

Gene

RPC_4089

Organism
Rhodopseudomonas palustris (strain BisB18)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 56 (01 Oct 2014)
      Sequence version 1 (18 Apr 2006)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Thymidine + phosphate = thymine + 2-deoxy-alpha-D-ribose 1-phosphate.UniRule annotation

    GO - Molecular functioni

    1. phosphorylase activity Source: InterPro
    2. thymidine phosphorylase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. pyrimidine nucleobase metabolic process Source: InterPro
    2. pyrimidine nucleoside metabolic process Source: InterPro

    Keywords - Molecular functioni

    Glycosyltransferase, Transferase

    Enzyme and pathway databases

    BioCyciRPAL316056:GH3E-4145-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Putative thymidine phosphorylaseUniRule annotation (EC:2.4.2.4UniRule annotation)
    Alternative name(s):
    TdRPaseUniRule annotation
    Gene namesi
    Ordered Locus Names:RPC_4089
    OrganismiRhodopseudomonas palustris (strain BisB18)
    Taxonomic identifieri316056 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
    ProteomesiUP000001948: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 513513Putative thymidine phosphorylasePRO_0000314715Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi316056.RPC_4089.

    Structurei

    3D structure databases

    ProteinModelPortaliQ20Z21.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family. Type 2 subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0213.
    HOGENOMiHOG000252767.
    KOiK00758.
    OMAiCLIWGGH.
    OrthoDBiEOG61ZTGG.

    Family and domain databases

    Gene3Di3.40.1030.10. 1 hit.
    3.90.1170.30. 1 hit.
    HAMAPiMF_00703. Thymid_phosp_2.
    InterProiIPR000312. Glycosyl_Trfase_fam3.
    IPR017459. Glycosyl_Trfase_fam3_N_dom.
    IPR013102. PYNP_C.
    IPR000053. Pyrmidine_PPase.
    IPR017872. Pyrmidine_PPase_CS.
    IPR028579. Thym_Pase_Put.
    IPR013466. Thymidine/AMP_Pase.
    [Graphical view]
    PANTHERiPTHR10515. PTHR10515. 1 hit.
    PfamiPF02885. Glycos_trans_3N. 1 hit.
    PF00591. Glycos_transf_3. 1 hit.
    PF07831. PYNP_C. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000478. TP_PyNP. 1 hit.
    SMARTiSM00941. PYNP_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF47648. SSF47648. 1 hit.
    SSF52418. SSF52418. 1 hit.
    SSF54680. SSF54680. 1 hit.
    TIGRFAMsiTIGR02645. ARCH_P_rylase. 1 hit.
    PROSITEiPS00647. THYMID_PHOSPHORYLASE. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q20Z21-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTSADAPRPQ LKIRLIHLDT GRENVAVMSR RSKALRPEVF SGFSRVEIRR    50
    NAKSVLATLL ITDDDALVGP DELGLAEPAF RRFGEPAGTF VTVSPATPPD 100
    SLDAVRGKIQ GRTLSAAEIT AIVNDLTRYR YSDMEIAAFL IGAARFMTSD 150
    ELLALVSAMA SVGTQLRWDR PIVVDKHCIG GIPGNRTSMI LVPIVAAHGL 200
    TIPKTSSRAI TSPAGTADTM EVLARVDVSV AEMKEIVAAC NGCLIWGGHV 250
    NLSPADDILI SVERPLCLDT REQMVASIMS KKLAAGSTHL LVDLPVGPTA 300
    KVASALDAMR LRKLFEFVGD HFGIAVETIT TDGRQPIGNG IGPVLEAQDV 350
    MAVLGNDPKA PADLREKSLR LAAHLLEYDP HLRGGAGYAR ARELLESGAA 400
    LKQMQKIIDN QGPSTCHKDL GTLTAEVTAE RDGVVSAIDC LQLNRLARTA 450
    GAPIDKGAGI RLFKKVGDRV EAGEPLYRIY AFDPAERELA VAAAKLACGY 500
    TVDDAQTFRE QVM 513
    Length:513
    Mass (Da):54,925
    Last modified:April 18, 2006 - v1
    Checksum:iA97C3D79D65D8A8A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000301 Genomic DNA. Translation: ABD89615.1.
    RefSeqiYP_533934.1. NC_007925.1.

    Genome annotation databases

    EnsemblBacteriaiABD89615; ABD89615; RPC_4089.
    GeneIDi3973178.
    KEGGirpc:RPC_4089.
    PATRICi23272990. VBIRhoPal29154_4170.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000301 Genomic DNA. Translation: ABD89615.1 .
    RefSeqi YP_533934.1. NC_007925.1.

    3D structure databases

    ProteinModelPortali Q20Z21.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 316056.RPC_4089.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABD89615 ; ABD89615 ; RPC_4089 .
    GeneIDi 3973178.
    KEGGi rpc:RPC_4089.
    PATRICi 23272990. VBIRhoPal29154_4170.

    Phylogenomic databases

    eggNOGi COG0213.
    HOGENOMi HOG000252767.
    KOi K00758.
    OMAi CLIWGGH.
    OrthoDBi EOG61ZTGG.

    Enzyme and pathway databases

    BioCyci RPAL316056:GH3E-4145-MONOMER.

    Family and domain databases

    Gene3Di 3.40.1030.10. 1 hit.
    3.90.1170.30. 1 hit.
    HAMAPi MF_00703. Thymid_phosp_2.
    InterProi IPR000312. Glycosyl_Trfase_fam3.
    IPR017459. Glycosyl_Trfase_fam3_N_dom.
    IPR013102. PYNP_C.
    IPR000053. Pyrmidine_PPase.
    IPR017872. Pyrmidine_PPase_CS.
    IPR028579. Thym_Pase_Put.
    IPR013466. Thymidine/AMP_Pase.
    [Graphical view ]
    PANTHERi PTHR10515. PTHR10515. 1 hit.
    Pfami PF02885. Glycos_trans_3N. 1 hit.
    PF00591. Glycos_transf_3. 1 hit.
    PF07831. PYNP_C. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000478. TP_PyNP. 1 hit.
    SMARTi SM00941. PYNP_C. 1 hit.
    [Graphical view ]
    SUPFAMi SSF47648. SSF47648. 1 hit.
    SSF52418. SSF52418. 1 hit.
    SSF54680. SSF54680. 1 hit.
    TIGRFAMsi TIGR02645. ARCH_P_rylase. 1 hit.
    PROSITEi PS00647. THYMID_PHOSPHORYLASE. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BisB18.

    Entry informationi

    Entry nameiTYPH_RHOPB
    AccessioniPrimary (citable) accession number: Q20Z21
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 15, 2008
    Last sequence update: April 18, 2006
    Last modified: October 1, 2014
    This is version 56 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3