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Protein
Submitted name:

Serpentine Receptor, class B (Beta)

Gene

srb-13

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

ReceptorImported

Names & Taxonomyi

Protein namesi
Submitted name:
Serpentine Receptor, class B (Beta)Imported
Gene namesi
Name:srb-13Imported
ORF Names:CELE_F58A6.11Imported, F58A6.11Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome II

Organism-specific databases

WormBaseiF58A6.11; CE07297; WBGene00019028; srb-13.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei26 – 4419HelicalSequence analysisAdd
BLAST
Transmembranei56 – 8328HelicalSequence analysisAdd
BLAST
Transmembranei103 – 12220HelicalSequence analysisAdd
BLAST
Transmembranei142 – 16322HelicalSequence analysisAdd
BLAST
Transmembranei189 – 21022HelicalSequence analysisAdd
BLAST
Transmembranei240 – 26627HelicalSequence analysisAdd
BLAST
Transmembranei278 – 30124HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

PaxDbiQ20963.

Interactioni

Protein-protein interaction databases

STRINGi6239.F58A6.11.

Structurei

3D structure databases

ProteinModelPortaliQ20963.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG410KAN0. Eukaryota.
ENOG4110I48. LUCA.
GeneTreeiENSGT00390000002942.
HOGENOMiHOG000017074.
InParanoidiQ20963.
OMAiSFLMLPN.
OrthoDBiEOG72RN30.
PhylomeDBiQ20963.

Family and domain databases

InterProiIPR002184. 7TM_GPCR_serpentine_rcpt_Srb.
[Graphical view]
PfamiPF02175. 7TM_GPCR_Srb. 1 hit.
[Graphical view]
PRINTSiPR00699. TMPROTEINSRB.

Sequencei

Sequence statusi: Complete.

Q20963-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAGINQTKCD LGFQITFNTV YRFSQFYTFS VSSFAVPGLI YFMFKRLFQL
60 70 80 90 100
YFHGNLKTLL IAYFISILLY AVMLCFAFGY QFFVPFFIKS NCDLIINKTL
110 120 130 140 150
FKYIHTSVIF LLTTPMMFPL GFSIERFTAM AMASRYENIR TLIGPVLVIF
160 170 180 190 200
LIIPNCIIFY FLFQHETYDD TFISFLMLPN TTAVNFNTYL WFLLYLNIGN
210 220 230 240 250
LALNVLLLLV HRKFKRRLLL HKTSLSTRYA IEEISQSSKF TLIITFTHLL
260 270 280 290 300
FFGCNTICSI LVRVLGEPFF GSFINHSVAR GVNCAVPTYN LVIVVVGFVS
310 320 330 340
LSKLNSRRQQ EVQTTVQLKT TGKEGARNYD NITANQWATI TQIGF
Length:345
Mass (Da):39,809
Last modified:November 1, 1996 - v1
Checksum:i5AF6D824127A299C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284602 Genomic DNA. Translation: CCD65841.1.
PIRiT16498.
RefSeqiNP_494958.1. NM_062557.1.
UniGeneiCel.34572.

Genome annotation databases

EnsemblMetazoaiF58A6.11; F58A6.11; WBGene00019028.
GeneIDi3565668.
KEGGicel:CELE_F58A6.11.
UCSCiF58A6.11. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284602 Genomic DNA. Translation: CCD65841.1.
PIRiT16498.
RefSeqiNP_494958.1. NM_062557.1.
UniGeneiCel.34572.

3D structure databases

ProteinModelPortaliQ20963.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.F58A6.11.

Proteomic databases

PaxDbiQ20963.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF58A6.11; F58A6.11; WBGene00019028.
GeneIDi3565668.
KEGGicel:CELE_F58A6.11.
UCSCiF58A6.11. c. elegans.

Organism-specific databases

CTDi3565668.
WormBaseiF58A6.11; CE07297; WBGene00019028; srb-13.

Phylogenomic databases

eggNOGiENOG410KAN0. Eukaryota.
ENOG4110I48. LUCA.
GeneTreeiENSGT00390000002942.
HOGENOMiHOG000017074.
InParanoidiQ20963.
OMAiSFLMLPN.
OrthoDBiEOG72RN30.
PhylomeDBiQ20963.

Family and domain databases

InterProiIPR002184. 7TM_GPCR_serpentine_rcpt_Srb.
[Graphical view]
PfamiPF02175. 7TM_GPCR_Srb. 1 hit.
[Graphical view]
PRINTSiPR00699. TMPROTEINSRB.
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiQ20963_CAEEL
AccessioniPrimary (citable) accession number: Q20963
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: June 8, 2016
This is version 91 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.