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Protein
Submitted name:

Serpentine Receptor, class B (Beta)

Gene

srb-12

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

ReceptorImported

Names & Taxonomyi

Protein namesi
Submitted name:
Serpentine Receptor, class B (Beta)Imported
Gene namesi
Name:srb-12Imported
ORF Names:CELE_F58A6.10Imported, F58A6.10Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome II

Organism-specific databases

WormBaseiF58A6.10; CE07296; WBGene00019027; srb-12.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei20 – 4425HelicalSequence analysisAdd
BLAST
Transmembranei56 – 8328HelicalSequence analysisAdd
BLAST
Transmembranei103 – 12220HelicalSequence analysisAdd
BLAST
Transmembranei142 – 16322HelicalSequence analysisAdd
BLAST
Transmembranei189 – 21022HelicalSequence analysisAdd
BLAST
Transmembranei240 – 26223HelicalSequence analysisAdd
BLAST
Transmembranei282 – 30120HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

PaxDbiQ20962.

Structurei

3D structure databases

ProteinModelPortaliQ20962.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG410K9X9. Eukaryota.
ENOG4110IVW. LUCA.
GeneTreeiENSGT00390000002942.
HOGENOMiHOG000017074.
InParanoidiQ20962.
OMAiCATPTYN.
OrthoDBiEOG7Q5HJ6.
PhylomeDBiQ20962.

Family and domain databases

InterProiIPR002184. 7TM_GPCR_serpentine_rcpt_Srb.
[Graphical view]
PfamiPF02175. 7TM_GPCR_Srb. 1 hit.
[Graphical view]
PRINTSiPR00699. TMPROTEINSRB.

Sequencei

Sequence statusi: Complete.

Q20962-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSEANLTECE LAYQLTYHPF YMIAQFWSFF VSLLAMPSLI FFMVEKVFKL
60 70 80 90 100
PFHGNLKFLL VSYFIGTFLF ASIICFTFGY HFFVPFFVTS NCDLIINATL
110 120 130 140 150
FKYGHMIALI FMTIPMILPT AFTVERFVAL KMAHSYEHVR TLLGPVLVLV
160 170 180 190 200
VIAIDSMFLY DIYGQEKFDK PFINFILVPA TSALQFNSFL WYMLYLKITN
210 220 230 240 250
FICNLILLFI HKILHQRYRR KNVSLSVKYE MQEISQSSRF TLIVTFTHLL
260 270 280 290 300
FFGWYVSTIL LIRTVGPDFF RGFINYTVMR GVYCATPTYN LVIVFIGFKA
310 320 330 340
LNHLNFKRNN KVQSTIQIKS TGQEGAENYD NAISNYWDSV YTMNKSKL
Length:348
Mass (Da):40,694
Last modified:November 1, 1996 - v1
Checksum:iE4F84A12E2741EB6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284602 Genomic DNA. Translation: CCD65840.1.
PIRiT16497.
RefSeqiNP_494957.1. NM_062556.1.
UniGeneiCel.29072.

Genome annotation databases

EnsemblMetazoaiF58A6.10; F58A6.10; WBGene00019027.
GeneIDi186490.
KEGGicel:CELE_F58A6.10.
UCSCiF58A6.10. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284602 Genomic DNA. Translation: CCD65840.1.
PIRiT16497.
RefSeqiNP_494957.1. NM_062556.1.
UniGeneiCel.29072.

3D structure databases

ProteinModelPortaliQ20962.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PaxDbiQ20962.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF58A6.10; F58A6.10; WBGene00019027.
GeneIDi186490.
KEGGicel:CELE_F58A6.10.
UCSCiF58A6.10. c. elegans.

Organism-specific databases

CTDi186490.
WormBaseiF58A6.10; CE07296; WBGene00019027; srb-12.

Phylogenomic databases

eggNOGiENOG410K9X9. Eukaryota.
ENOG4110IVW. LUCA.
GeneTreeiENSGT00390000002942.
HOGENOMiHOG000017074.
InParanoidiQ20962.
OMAiCATPTYN.
OrthoDBiEOG7Q5HJ6.
PhylomeDBiQ20962.

Miscellaneous databases

NextBioi932016.

Family and domain databases

InterProiIPR002184. 7TM_GPCR_serpentine_rcpt_Srb.
[Graphical view]
PfamiPF02175. 7TM_GPCR_Srb. 1 hit.
[Graphical view]
PRINTSiPR00699. TMPROTEINSRB.
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiQ20962_CAEEL
AccessioniPrimary (citable) accession number: Q20962
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: December 9, 2015
This is version 89 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.