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Protein
Submitted name:

COLlagen

Gene

col-160

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
COLlagenImported
Gene namesi
Name:col-160Imported
ORF Names:CELE_F57B1.4Imported, F57B1.4Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome V

Organism-specific databases

WormBaseiF57B1.4; CE31962; WBGene00000733; col-160.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei20 – 4223HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

EPDiQ20921.
PaxDbiQ20921.

Interactioni

Protein-protein interaction databases

STRINGi6239.F57B1.4.1.

Structurei

3D structure databases

ProteinModelPortaliQ20921.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini18 – 7053Col_cuticle_NInterPro annotationAdd
BLAST

Keywords - Domaini

CollagenImported, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG410IS72. Eukaryota.
ENOG410YW6Y. LUCA.
GeneTreeiENSGT00610000086159.
HOGENOMiHOG000085656.
InParanoidiQ20921.
OMAiRNGSWFE.
PhylomeDBiQ20921.

Family and domain databases

InterProiIPR002486. Col_cuticle_N.
IPR008160. Collagen.
[Graphical view]
PfamiPF01484. Col_cuticle_N. 1 hit.
PF01391. Collagen. 2 hits.
[Graphical view]
SMARTiSM01088. Col_cuticle_N. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q20921-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSEDPKQIA YETESLRKVA FFGIAVSTIA TLTAIVAVPM LYNYMQHVQS
60 70 80 90 100
SLQSEVEFCA HRSNGLWDEY QRFEGVSGVA GRIKRESYHR RASGPHRASK
110 120 130 140 150
VRRQSYGADA AVGGFGGSAG GSCCSCGTGA AGPAGSPGQD GAPGNDGAPG
160 170 180 190 200
APGNPGQDAS EDQTAGPDSF CFDCPAGPPG PSGAPGQKGP SGAPGAPGQS
210 220 230 240 250
GGASLPGPPG PAGPPGPSGQ PGSNGNAGAP GAPGQVVDVP GTPGPAGPPG
260 270 280 290 300
PPGPAGAPGQ PGQSGSAQPG GPGPQGDAGA PGAPGQPGQA GAPGQDGDSG
310
SEGACDHCPP PRTAPGY
Length:317
Mass (Da):30,281
Last modified:March 1, 2003 - v2
Checksum:i4E6BA587AF105A8D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284605 Genomic DNA. Translation: CAB01508.2.
PIRiT22827.
RefSeqiNP_506284.2. NM_073883.5.
UniGeneiCel.24968.

Genome annotation databases

EnsemblMetazoaiF57B1.4.1; F57B1.4.1; WBGene00000733.
F57B1.4.2; F57B1.4.2; WBGene00000733.
F57B1.4.3; F57B1.4.3; WBGene00000733.
GeneIDi179804.
KEGGicel:CELE_F57B1.4.
UCSCiF57B1.4.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284605 Genomic DNA. Translation: CAB01508.2.
PIRiT22827.
RefSeqiNP_506284.2. NM_073883.5.
UniGeneiCel.24968.

3D structure databases

ProteinModelPortaliQ20921.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.F57B1.4.1.

Proteomic databases

EPDiQ20921.
PaxDbiQ20921.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF57B1.4.1; F57B1.4.1; WBGene00000733.
F57B1.4.2; F57B1.4.2; WBGene00000733.
F57B1.4.3; F57B1.4.3; WBGene00000733.
GeneIDi179804.
KEGGicel:CELE_F57B1.4.
UCSCiF57B1.4.1. c. elegans.

Organism-specific databases

CTDi179804.
WormBaseiF57B1.4; CE31962; WBGene00000733; col-160.

Phylogenomic databases

eggNOGiENOG410IS72. Eukaryota.
ENOG410YW6Y. LUCA.
GeneTreeiENSGT00610000086159.
HOGENOMiHOG000085656.
InParanoidiQ20921.
OMAiRNGSWFE.
PhylomeDBiQ20921.

Miscellaneous databases

NextBioi906928.

Family and domain databases

InterProiIPR002486. Col_cuticle_N.
IPR008160. Collagen.
[Graphical view]
PfamiPF01484. Col_cuticle_N. 1 hit.
PF01391. Collagen. 2 hits.
[Graphical view]
SMARTiSM01088. Col_cuticle_N. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiQ20921_CAEEL
AccessioniPrimary (citable) accession number: Q20921
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: March 1, 2003
Last modified: March 16, 2016
This is version 99 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.