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Protein
Submitted name:

COLlagen

Gene

col-160

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Submitted name:
COLlagenImported
Gene namesi
Name:col-160Imported
ORF Names:CELE_F57B1.4Imported, F57B1.4Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome V

Organism-specific databases

WormBaseiF57B1.4; CE31962; WBGene00000733; col-160.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei20 – 42HelicalSequence analysisAdd BLAST23

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

EPDiQ20921.
PaxDbiQ20921.
PeptideAtlasiQ20921.

Expressioni

Gene expression databases

BgeeiWBGene00000733.

Interactioni

Protein-protein interaction databases

STRINGi6239.F57B1.4.1.

Structurei

3D structure databases

ProteinModelPortaliQ20921.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini18 – 70Col_cuticle_NInterPro annotationAdd BLAST53

Keywords - Domaini

CollagenImported, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG410IS72. Eukaryota.
ENOG410YW6Y. LUCA.
GeneTreeiENSGT00610000086159.
HOGENOMiHOG000085656.
InParanoidiQ20921.
OMAiRNGSWFE.
OrthoDBiEOG091G0SKV.
PhylomeDBiQ20921.

Family and domain databases

InterProiView protein in InterPro
IPR002486. Col_cuticle_N.
IPR008160. Collagen.
PfamiView protein in Pfam
PF01484. Col_cuticle_N. 1 hit.
PF01391. Collagen. 2 hits.
SMARTiView protein in SMART
SM01088. Col_cuticle_N. 1 hit.

Sequencei

Sequence statusi: Complete.

Q20921-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSEDPKQIA YETESLRKVA FFGIAVSTIA TLTAIVAVPM LYNYMQHVQS
60 70 80 90 100
SLQSEVEFCA HRSNGLWDEY QRFEGVSGVA GRIKRESYHR RASGPHRASK
110 120 130 140 150
VRRQSYGADA AVGGFGGSAG GSCCSCGTGA AGPAGSPGQD GAPGNDGAPG
160 170 180 190 200
APGNPGQDAS EDQTAGPDSF CFDCPAGPPG PSGAPGQKGP SGAPGAPGQS
210 220 230 240 250
GGASLPGPPG PAGPPGPSGQ PGSNGNAGAP GAPGQVVDVP GTPGPAGPPG
260 270 280 290 300
PPGPAGAPGQ PGQSGSAQPG GPGPQGDAGA PGAPGQPGQA GAPGQDGDSG
310
SEGACDHCPP PRTAPGY
Length:317
Mass (Da):30,281
Last modified:March 1, 2003 - v2
Checksum:i4E6BA587AF105A8D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284605 Genomic DNA. Translation: CAB01508.2.
PIRiT22827.
RefSeqiNP_506284.2. NM_073883.5.
UniGeneiCel.24968.

Genome annotation databases

EnsemblMetazoaiF57B1.4.1; F57B1.4.1; WBGene00000733.
F57B1.4.2; F57B1.4.2; WBGene00000733.
F57B1.4.3; F57B1.4.3; WBGene00000733.
GeneIDi179804.
KEGGicel:CELE_F57B1.4.
UCSCiF57B1.4.1. c. elegans.

Similar proteinsi

Entry informationi

Entry nameiQ20921_CAEEL
AccessioniPrimary (citable) accession number: Q20921
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: March 1, 2003
Last modified: August 30, 2017
This is version 105 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported