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Protein
Submitted name:

TRAnsformer: XX animals transformed into males

Gene

tra-4

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
TRAnsformer: XX animals transformed into malesImported
Gene namesi
Name:tra-4Imported
ORF Names:CELE_F53B3.1Imported, F53B3.1Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome X

Organism-specific databases

WormBaseiF53B3.1; CE28444; WBGene00018740; tra-4.

PTM / Processingi

Proteomic databases

EPDiQ20709.
PaxDbiQ20709.
PRIDEiQ20709.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
par-6Q9NAN25EBI-315012,EBI-318782
T04H1.2Q221743EBI-315012,EBI-311938

Protein-protein interaction databases

DIPiDIP-25182N.
IntActiQ20709. 21 interactions.
MINTiMINT-1056362.
STRINGi6239.F53B3.1.

Structurei

3D structure databases

ProteinModelPortaliQ20709.
SMRiQ20709. Positions 208-243, 320-359, 372-473, 493-523.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini413 – 44129C2H2-typeInterPro annotationAdd
BLAST
Domaini442 – 46625C2H2-typeInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiENOG410ITHA. Eukaryota.
ENOG410YEQC. LUCA.
GeneTreeiENSGT00840000130062.
HOGENOMiHOG000016582.
InParanoidiQ20709.
OMAiKHEEMVE.
OrthoDBiEOG7BKCZC.
PhylomeDBiQ20709.

Family and domain databases

InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 7 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 4 hits.
PS50157. ZINC_FINGER_C2H2_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q20709-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDDPNQCTIK QEDSITRPRP TEAPTIQNLK QEPAIEEGSS STMDNMLMLT
60 70 80 90 100
IDTNQANWQG TYDDDEMDLN NKTDLIPLLE TEKTTINEDE LYDDEEDDDD
110 120 130 140 150
DEEIKKGIGF ELLAQALGMS AKVPVEKEEP EKERAKLSGV GEFMKQIRGE
160 170 180 190 200
IKPIQKERIV LDELGFRVRD PSKFPPCRIA EVQQTLTLAD HQDGIDLPPP
210 220 230 240 250
NAPTDVRIVR KLIRQKMVRC KKCKNRFIEK NIYERHLRDK HPDLYEEYIR
260 270 280 290 300
EQEEEVELQR LEEIEANRIE ELQTGGFIPP ENEISQPSED PNYIPLPGEN
310 320 330 340 350
NGGLVPRFDY YGRIKQLKRP YKKKVSPQCP FCDKRFRNEF SLKKHFAKKH
360 370 380 390 400
EEMVEFQQCL KCFKCVENDA EMANHDCELT YVCFECTPIR NLCTDNRLLN
410 420 430 440 450
HRKKFHRGAN SGFRCSFCNM KFLTPRKLRK HKKMSHVFTK TFQCHFCEEI
460 470 480 490 500
FISEVAVMTH ERMHTGIIKF ECKVCDFRAN RYTAMEEHKR DEHGYVCAIC
510 520 530 540
HERHAEYPEM KHHVYEEHGG YLAADEPTAY VETPRMWILY KGE
Length:543
Mass (Da):63,784
Last modified:October 1, 2001 - v2
Checksum:i23A5307414BB61C1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284606 Genomic DNA. Translation: CCD61859.1.
PIRiT16449.
RefSeqiNP_508494.1. NM_076093.3.
UniGeneiCel.6884.

Genome annotation databases

EnsemblMetazoaiF53B3.1; F53B3.1; WBGene00018740.
GeneIDi180575.
KEGGicel:CELE_F53B3.1.
UCSCiF53B3.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284606 Genomic DNA. Translation: CCD61859.1.
PIRiT16449.
RefSeqiNP_508494.1. NM_076093.3.
UniGeneiCel.6884.

3D structure databases

ProteinModelPortaliQ20709.
SMRiQ20709. Positions 208-243, 320-359, 372-473, 493-523.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-25182N.
IntActiQ20709. 21 interactions.
MINTiMINT-1056362.
STRINGi6239.F53B3.1.

Proteomic databases

EPDiQ20709.
PaxDbiQ20709.
PRIDEiQ20709.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF53B3.1; F53B3.1; WBGene00018740.
GeneIDi180575.
KEGGicel:CELE_F53B3.1.
UCSCiF53B3.1. c. elegans.

Organism-specific databases

CTDi180575.
WormBaseiF53B3.1; CE28444; WBGene00018740; tra-4.

Phylogenomic databases

eggNOGiENOG410ITHA. Eukaryota.
ENOG410YEQC. LUCA.
GeneTreeiENSGT00840000130062.
HOGENOMiHOG000016582.
InParanoidiQ20709.
OMAiKHEEMVE.
OrthoDBiEOG7BKCZC.
PhylomeDBiQ20709.

Miscellaneous databases

NextBioi909956.

Family and domain databases

InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 7 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 4 hits.
PS50157. ZINC_FINGER_C2H2_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiQ20709_CAEEL
AccessioniPrimary (citable) accession number: Q20709
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: October 1, 2001
Last modified: May 11, 2016
This is version 140 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.