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Protein

60S ribosomal protein L23a 2

Gene

rpl-25.2

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

This protein binds to a specific region on the 26S rRNA.By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L23a 2
Gene namesi
ORF Names:F52B5.6
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiF52B5.6; CE05721; WBGene00004439; rpl-25.2.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001294711 – 14660S ribosomal protein L23a 2Add BLAST146

Proteomic databases

EPDiQ20647.
PaxDbiQ20647.
PeptideAtlasiQ20647.
PRIDEiQ20647.

PTM databases

iPTMnetiQ20647.

Expressioni

Gene expression databases

BgeeiWBGene00004439.

Interactioni

Protein-protein interaction databases

BioGridi38051. 1 interactor.
DIPiDIP-27075N.
MINTiMINT-1097601.
STRINGi6239.F52B5.6.2.

Structurei

3D structure databases

ProteinModelPortaliQ20647.
SMRiQ20647.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG1751. Eukaryota.
COG0089. LUCA.
GeneTreeiENSGT00390000003263.
HOGENOMiHOG000231365.
InParanoidiQ20647.
KOiK02893.
OMAiHKVIIHP.
OrthoDBiEOG091G0UYL.
PhylomeDBiQ20647.

Family and domain databases

HAMAPiMF_01369_A. Ribosomal_L23_A. 1 hit.
InterProiView protein in InterPro
IPR019985. Ribosomal_L23.
IPR012678. Ribosomal_L23/L15e_core_dom_sf.
IPR001014. Ribosomal_L23/L25_CS.
IPR005633. Ribosomal_L23/L25_N.
IPR013025. Ribosomal_L25/23.
PfamiView protein in Pfam
PF00276. Ribosomal_L23. 1 hit.
PF03939. Ribosomal_L23eN. 1 hit.
SUPFAMiSSF54189. SSF54189. 1 hit.
TIGRFAMsiTIGR03636. uL23_arch. 1 hit.
PROSITEiView protein in PROSITE
PS00050. RIBOSOMAL_L23. 1 hit.

Sequencei

Sequence statusi: Complete.

Q20647-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAPSSNKVGK AIQAKKAVVK GSKTNVRKNV RTSVHFRRPK TLVTARAPRY
60 70 80 90 100
ARKSAPARDK LDSFAVIKAP HTTESSMKKI EDHNTLVFIV DEKANKHHIK
110 120 130 140
RAVHALYNVK AVKVNTLITP LQQKKAYVRL ASDYDALDVA NKIGFI
Length:146
Mass (Da):16,283
Last modified:November 1, 1996 - v1
Checksum:i3380545260EA88C7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z75541 Genomic DNA. Translation: CAA99858.1.
PIRiT22496.
RefSeqiNP_492263.1. NM_059862.3.
UniGeneiCel.8711.

Genome annotation databases

EnsemblMetazoaiF52B5.6.1; F52B5.6.1; WBGene00004439.
F52B5.6.2; F52B5.6.2; WBGene00004439.
F52B5.6.3; F52B5.6.3; WBGene00004439.
F52B5.6.4; F52B5.6.4; WBGene00004439.
GeneIDi172617.
KEGGicel:CELE_F52B5.6.
UCSCiF52B5.6.1. c. elegans.

Similar proteinsi

Entry informationi

Entry nameiR23A2_CAEEL
AccessioniPrimary (citable) accession number: Q20647
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1996
Last modified: November 22, 2017
This is version 122 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families