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Protein
Submitted name:

Uncharacterized protein

Gene

pam-1

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • metalloaminopeptidase activity Source: WormBase
  • zinc ion binding Source: InterPro

GO - Biological processi

  • peptide catabolic process Source: WormBase
Complete GO annotation...

Enzyme and pathway databases

ReactomeiR-CEL-983168. Antigen processing: Ubiquitination & Proteasome degradation.

Protein family/group databases

MEROPSiM01.A28.

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:pam-1Imported
ORF Names:CELE_F49E8.3Imported, F49E8.3Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome IV

Organism-specific databases

WormBaseiF49E8.3a; CE10790; WBGene00003914; pam-1.

Subcellular locationi

GO - Cellular componenti

  • cytoplasm Source: WormBase
Complete GO annotation...

PTM / Processingi

Proteomic databases

EPDiQ20627.
PaxDbiQ20627.
PRIDEiQ20627.

Expressioni

Gene expression databases

ExpressionAtlasiQ20627. baseline.

Interactioni

Protein-protein interaction databases

IntActiQ20627. 1 interaction.
STRINGi6239.F49E8.3b.

Structurei

3D structure databases

ProteinModelPortaliQ20627.
SMRiQ20627. Positions 15-871.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini15 – 402388Peptidase_M1InterPro annotationAdd
BLAST
Domaini538 – 862325ERAP1_CInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG1046. Eukaryota.
COG0308. LUCA.
GeneTreeiENSGT00760000119082.
HOGENOMiHOG000106482.

Family and domain databases

InterProiIPR024571. ERAP1-like_C_dom.
IPR001930. Peptidase_M1.
IPR014782. Peptidase_M1_N.
[Graphical view]
PANTHERiPTHR11533. PTHR11533. 1 hit.
PfamiPF11838. ERAP1_C. 1 hit.
PF01433. Peptidase_M1. 1 hit.
[Graphical view]
PRINTSiPR00756. ALADIPTASE.

Sequencei

Sequence statusi: Complete.

Q20627-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAACGNPSAA VKFERLPTFA EPTHYNVRLS PCLNQFSFDG HATIDVTIKE
60 70 80 90 100
ATDVLKVHAQ SLLIQSVSLI TQPGDASKSL ETSYDDKLNI LTIKLPTTMQ
110 120 130 140 150
PQKVQLDFKF VGELNDKMRG FYRSQYKDKN GTEKFLASTQ FESTYARYAF
160 170 180 190 200
PCFDEPIYKA TFDVTLEVEN HLTALSNMNV ISETPTADGK RKAVTFATSP
210 220 230 240 250
KMSSYLVAFA VGELEYISAQ TKSGVEMRVY TVPGKKEQGQ YSLDLSVKCI
260 270 280 290 300
DWYNEWFDIK YPLPKCDLIA IPDFSMGAME NWGLVTYREI ALLVDPGVTS
310 320 330 340 350
TRQKSRVALV VAHELAHLWF GNLVTMKWWT DLWLKEGFAS FMEYMFVGAN
360 370 380 390 400
CPEFKIWLHF LNDELASGMG LDALRNSHPI EVEIDNPNEL DEIYDSITYA
410 420 430 440 450
KSNSVNRMLC YYLSEPVFQK GLRLYLKRFQ YSNAVTQDLW TALSEASGQN
460 470 480 490 500
VNELMSGWTQ QMGFPVLKVS QRQDGNNRIL TVEQRRFISD GGEDPKNSQW
510 520 530 540 550
QVPITVAVGS SPSDVKARFL LKEKQQEFTI EGVAPGEWVK LNSGTTGFYR
560 570 580 590 600
VEYSDEMLTA MLPDIASRRM PVLDRFGLIN DLSALLNTGR VSIAQFVQVA
610 620 630 640 650
ASSAKEDEYV VWGAIDEGMS KLLACAREMS EDTLKSAKQL VVKMFEQTGA
660 670 680 690 700
ELGFAEQAGE DSQKMMLRSL VQARLARAGH QPTIDKFTQM FNDFLEKGTP
710 720 730 740 750
IHPDIRLATF GVVARYGGKE GFDKLMNLRE TTTFQEIERQ TMVAMSQTPE
760 770 780 790 800
ESLLAQLFEY GFEKNKVRPQ DQLYLFLGTG ATHMGQQYAW KYFCEHIKEF
810 820 830 840 850
LDKYGGANSS LFQRCLKFAG ESFGNEKRAV EFQDFFCNCN VLSDTDRQTL
860 870 880
ARPIGQTVEA IRLNARLLES NRQIIENLLK QSNV
Length:884
Mass (Da):100,009
Last modified:November 1, 1996 - v1
Checksum:i69A77B1A55558FF0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA. Translation: CCD70444.1.
PIRiT29637.
RefSeqiNP_001023209.1. NM_001028038.4.
UniGeneiCel.34182.

Genome annotation databases

EnsemblMetazoaiF49E8.3a; F49E8.3a; WBGene00003914.
GeneIDi177528.
UCSCiF49E8.3a.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA. Translation: CCD70444.1.
PIRiT29637.
RefSeqiNP_001023209.1. NM_001028038.4.
UniGeneiCel.34182.

3D structure databases

ProteinModelPortaliQ20627.
SMRiQ20627. Positions 15-871.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ20627. 1 interaction.
STRINGi6239.F49E8.3b.

Protein family/group databases

MEROPSiM01.A28.

Proteomic databases

EPDiQ20627.
PaxDbiQ20627.
PRIDEiQ20627.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF49E8.3a; F49E8.3a; WBGene00003914.
GeneIDi177528.
UCSCiF49E8.3a.1. c. elegans.

Organism-specific databases

CTDi177528.
WormBaseiF49E8.3a; CE10790; WBGene00003914; pam-1.

Phylogenomic databases

eggNOGiKOG1046. Eukaryota.
COG0308. LUCA.
GeneTreeiENSGT00760000119082.
HOGENOMiHOG000106482.

Enzyme and pathway databases

ReactomeiR-CEL-983168. Antigen processing: Ubiquitination & Proteasome degradation.

Gene expression databases

ExpressionAtlasiQ20627. baseline.

Family and domain databases

InterProiIPR024571. ERAP1-like_C_dom.
IPR001930. Peptidase_M1.
IPR014782. Peptidase_M1_N.
[Graphical view]
PANTHERiPTHR11533. PTHR11533. 1 hit.
PfamiPF11838. ERAP1_C. 1 hit.
PF01433. Peptidase_M1. 1 hit.
[Graphical view]
PRINTSiPR00756. ALADIPTASE.
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiQ20627_CAEEL
AccessioniPrimary (citable) accession number: Q20627
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: June 8, 2016
This is version 116 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.