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Protein
Submitted name:

SCP-Like extracellular protein

Gene

scl-1

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

  • determination of adult lifespan Source: WormBase
  • response to heat Source: WormBase
  • response to UV Source: WormBase
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
SCP-Like extracellular proteinImported
Gene namesi
Name:scl-1Imported
ORF Names:CELE_F49E11.9Imported, F49E11.9Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome IV

Organism-specific databases

WormBaseiF49E11.9; CE05905; WBGene00004742; scl-1.

PTM / Processingi

Proteomic databases

PaxDbiQ20608.
PRIDEiQ20608.

Interactioni

Protein-protein interaction databases

STRINGi6239.F49E11.9.

Structurei

3D structure databases

ProteinModelPortaliQ20608.
SMRiQ20608. Positions 17-206.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini19 – 180162SCPInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the CRISP family.SAAS annotation

Phylogenomic databases

eggNOGiKOG3017. Eukaryota.
COG2340. LUCA.
GeneTreeiENSGT00760000119004.
HOGENOMiHOG000036879.
InParanoidiQ20608.
OMAiIAGCEHE.
OrthoDBiEOG7NKKMS.
PhylomeDBiQ20608.

Family and domain databases

Gene3Di3.40.33.10. 1 hit.
InterProiIPR001283. Allrgn_V5/Tpx1.
IPR014044. CAP_domain.
IPR002413. V5_allergen.
[Graphical view]
PANTHERiPTHR10334. PTHR10334. 1 hit.
PfamiPF00188. CAP. 1 hit.
[Graphical view]
PRINTSiPR00838. V5ALLERGEN.
PR00837. V5TPXLIKE.
SMARTiSM00198. SCP. 1 hit.
[Graphical view]
SUPFAMiSSF55797. SSF55797. 1 hit.

Sequencei

Sequence statusi: Complete.

Q20608-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYFILCLLAI GVNAQFTSTG QSSIVDAHNK LRSAIAKSTY VAKGTKKEPA
60 70 80 90 100
TDMRKMVVDS TVAASAQNYA NTCPTGHSKG TGYGENLYWS WTSADVGSLD
110 120 130 140 150
SYGEIAAAAW EKEFQDFGWK SNAMDTTLFN SGIGHATQMA WANTSSIGCG
160 170 180 190 200
VKNCGRDASM RNMNKIAVVC QYSPPGNTMG RPIYKEGTTC SSCSGSTKCD

TASGLCG
Length:207
Mass (Da):21,933
Last modified:November 1, 1996 - v1
Checksum:i5D6F6E96794B4C1A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA. Translation: CAA94348.1.
PIRiT22436.
RefSeqiNP_502502.1. NM_070101.1.
UniGeneiCel.26917.

Genome annotation databases

EnsemblMetazoaiF49E11.9; F49E11.9; WBGene00004742.
GeneIDi186053.
KEGGicel:CELE_F49E11.9.
UCSCiF49E11.9. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA. Translation: CAA94348.1.
PIRiT22436.
RefSeqiNP_502502.1. NM_070101.1.
UniGeneiCel.26917.

3D structure databases

ProteinModelPortaliQ20608.
SMRiQ20608. Positions 17-206.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.F49E11.9.

Proteomic databases

PaxDbiQ20608.
PRIDEiQ20608.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF49E11.9; F49E11.9; WBGene00004742.
GeneIDi186053.
KEGGicel:CELE_F49E11.9.
UCSCiF49E11.9. c. elegans.

Organism-specific databases

CTDi186053.
WormBaseiF49E11.9; CE05905; WBGene00004742; scl-1.

Phylogenomic databases

eggNOGiKOG3017. Eukaryota.
COG2340. LUCA.
GeneTreeiENSGT00760000119004.
HOGENOMiHOG000036879.
InParanoidiQ20608.
OMAiIAGCEHE.
OrthoDBiEOG7NKKMS.
PhylomeDBiQ20608.

Miscellaneous databases

NextBioi930474.

Family and domain databases

Gene3Di3.40.33.10. 1 hit.
InterProiIPR001283. Allrgn_V5/Tpx1.
IPR014044. CAP_domain.
IPR002413. V5_allergen.
[Graphical view]
PANTHERiPTHR10334. PTHR10334. 1 hit.
PfamiPF00188. CAP. 1 hit.
[Graphical view]
PRINTSiPR00838. V5ALLERGEN.
PR00837. V5TPXLIKE.
SMARTiSM00198. SCP. 1 hit.
[Graphical view]
SUPFAMiSSF55797. SSF55797. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiQ20608_CAEEL
AccessioniPrimary (citable) accession number: Q20608
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: May 11, 2016
This is version 105 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.