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Protein

40S ribosomal protein S9

Gene

rps-9

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-CEL-72702. Ribosomal scanning and start codon recognition.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S9
Gene namesi
Name:rps-9
ORF Names:F40F8.10
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome II

Organism-specific databases

WormBaseiF40F8.10; CE05849; WBGene00004478; rps-9.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 18918940S ribosomal protein S9PRO_0000132693Add
BLAST

Proteomic databases

EPDiQ20228.
PaxDbiQ20228.
PRIDEiQ20228.

Interactioni

Protein-protein interaction databases

BioGridi40009. 3 interactions.
DIPiDIP-25908N.
MINTiMINT-1122534.
STRINGi6239.F40F8.10.1.

Structurei

3D structure databases

ProteinModelPortaliQ20228.
SMRiQ20228. Positions 7-175.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini107 – 18175S4 RNA-bindingPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the ribosomal protein S4P family.Curated
Contains 1 S4 RNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG3301. Eukaryota.
COG0522. LUCA.
GeneTreeiENSGT00550000074829.
HOGENOMiHOG000194525.
InParanoidiQ20228.
KOiK02997.
OMAiTIVYRKG.
OrthoDBiEOG7KH9KZ.
PhylomeDBiQ20228.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
InterProiIPR022801. Ribosomal_S4/S9.
IPR005710. Ribosomal_S4/S9_euk/arc.
IPR001912. Ribosomal_S4/S9_N.
IPR018079. Ribosomal_S4_CS.
IPR002942. S4_RNA-bd.
[Graphical view]
PANTHERiPTHR11831. PTHR11831. 1 hit.
PfamiPF00163. Ribosomal_S4. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTiSM01390. Ribosomal_S4. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01018. uS4_arch. 1 hit.
PROSITEiPS00632. RIBOSOMAL_S4. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q20228-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARLKTVQSK VTKSPRRPFE KERLDQELKL IGTFGLKNKR EVWRVKYTLA
60 70 80 90 100
KVRKAARELL TLEDKDPKRL FEGNALLRRL VKIGVLDETK MKLDYVLGLK
110 120 130 140 150
VEDFLERRLQ TQVFKLGLAK SIHHARILIK QHHIRVRRQV VDVPSFIVRL
160 170 180
DSQKHIDFSL QSPYGGGRPG RVKRRTLRKG DGAGGDDEE
Length:189
Mass (Da):21,957
Last modified:November 1, 1996 - v1
Checksum:i160430FBBECECD6B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z69302 Genomic DNA. Translation: CAA93262.1.
PIRiT22034.
RefSeqiNP_496384.1. NM_063983.4.
UniGeneiCel.18245.

Genome annotation databases

EnsemblMetazoaiF40F8.10; F40F8.10; WBGene00004478.
GeneIDi174699.
KEGGicel:CELE_F40F8.10.
UCSCiF40F8.10.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z69302 Genomic DNA. Translation: CAA93262.1.
PIRiT22034.
RefSeqiNP_496384.1. NM_063983.4.
UniGeneiCel.18245.

3D structure databases

ProteinModelPortaliQ20228.
SMRiQ20228. Positions 7-175.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi40009. 3 interactions.
DIPiDIP-25908N.
MINTiMINT-1122534.
STRINGi6239.F40F8.10.1.

Proteomic databases

EPDiQ20228.
PaxDbiQ20228.
PRIDEiQ20228.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF40F8.10; F40F8.10; WBGene00004478.
GeneIDi174699.
KEGGicel:CELE_F40F8.10.
UCSCiF40F8.10.1. c. elegans.

Organism-specific databases

CTDi174699.
WormBaseiF40F8.10; CE05849; WBGene00004478; rps-9.

Phylogenomic databases

eggNOGiKOG3301. Eukaryota.
COG0522. LUCA.
GeneTreeiENSGT00550000074829.
HOGENOMiHOG000194525.
InParanoidiQ20228.
KOiK02997.
OMAiTIVYRKG.
OrthoDBiEOG7KH9KZ.
PhylomeDBiQ20228.

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-CEL-72702. Ribosomal scanning and start codon recognition.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

NextBioi885126.
PROiQ20228.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
InterProiIPR022801. Ribosomal_S4/S9.
IPR005710. Ribosomal_S4/S9_euk/arc.
IPR001912. Ribosomal_S4/S9_N.
IPR018079. Ribosomal_S4_CS.
IPR002942. S4_RNA-bd.
[Graphical view]
PANTHERiPTHR11831. PTHR11831. 1 hit.
PfamiPF00163. Ribosomal_S4. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTiSM01390. Ribosomal_S4. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01018. uS4_arch. 1 hit.
PROSITEiPS00632. RIBOSOMAL_S4. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    The C. elegans sequencing consortium
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2.

Entry informationi

Entry nameiRS9_CAEEL
AccessioniPrimary (citable) accession number: Q20228
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1996
Last modified: May 11, 2016
This is version 108 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.