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Protein
Submitted name:

Ribosomal Protein, Small subunit

Gene

rps-11

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • determination of adult lifespan Source: WormBase
  • translation Source: GO_Central
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal proteinUniRule annotationImported

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-CEL-72702. Ribosomal scanning and start codon recognition.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Submitted name:
Ribosomal Protein, Small subunitImported
Gene namesi
Name:rps-11Imported
ORF Names:CELE_F40F11.1Imported, F40F11.1Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome IV

Organism-specific databases

WormBaseiF40F11.1; CE05860; WBGene00004480; rps-11.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Proteomic databases

EPDiQ20206.
PaxDbiQ20206.
PeptideAtlasiQ20206.
PRIDEiQ20206.

Expressioni

Gene expression databases

BgeeiWBGene00004480.

Interactioni

Protein-protein interaction databases

DIPiDIP-26076N.
MINTiMINT-1096800.
STRINGi6239.F40F11.1.1.

Structurei

3D structure databases

ProteinModelPortaliQ20206.
SMRiQ20206.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini4 – 70Ribosomal_S17_NInterPro annotationAdd BLAST67

Sequence similaritiesi

Belongs to the ribosomal protein S17P family.UniRule annotation

Phylogenomic databases

eggNOGiKOG1728. Eukaryota.
COG0186. LUCA.
GeneTreeiENSGT00390000002732.
HOGENOMiHOG000231341.
InParanoidiQ20206.
KOiK02949.
OMAiLVTIGEC.
OrthoDBiEOG091G0QVV.
PhylomeDBiQ20206.

Family and domain databases

HAMAPiMF_01345_B. Ribosomal_S17_B. 1 hit.
InterProiIPR012340. NA-bd_OB-fold.
IPR032440. Ribosomal_S11_N.
IPR000266. Ribosomal_S17/S11.
IPR028333. Ribosomal_S17_arc-typ.
IPR019979. Ribosomal_S17_CS.
[Graphical view]
PANTHERiPTHR10744. PTHR10744. 1 hit.
PfamiPF00366. Ribosomal_S17. 1 hit.
PF16205. Ribosomal_S17_N. 1 hit.
[Graphical view]
PRINTSiPR00973. RIBOSOMALS17.
ProDomiPD001295. Ribosomal_S17. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR03630. uS17_arch. 1 hit.
PROSITEiPS00056. RIBOSOMAL_S17. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q20206-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSEQTERAFL KQPTVNLNNK ARILAGSKKT PRYIREVGLG FKAPRDAVEG
60 70 80 90 100
TYIDKKCPWA GNVPIRGMIL TGVVLKNKMT RTIVVRRDYL HYIKKYRRYE
110 120 130 140 150
KRHKNVPAHC SPAFRDIHPG DLVTIGECRP LSKTVRFNVL KVNKSGTSKK

GFSKF
Length:155
Mass (Da):17,745
Last modified:November 1, 1996 - v1
Checksum:iEF84542A264E51BD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA. Translation: CAA97792.1.
PIRiT22027.
RefSeqiNP_502186.1. NM_069785.5.
UniGeneiCel.7378.

Genome annotation databases

EnsemblMetazoaiF40F11.1.1; F40F11.1.1; WBGene00004480.
F40F11.1.2; F40F11.1.2; WBGene00004480.
GeneIDi178083.
KEGGicel:CELE_F40F11.1.
UCSCiF40F11.1.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA. Translation: CAA97792.1.
PIRiT22027.
RefSeqiNP_502186.1. NM_069785.5.
UniGeneiCel.7378.

3D structure databases

ProteinModelPortaliQ20206.
SMRiQ20206.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-26076N.
MINTiMINT-1096800.
STRINGi6239.F40F11.1.1.

Proteomic databases

EPDiQ20206.
PaxDbiQ20206.
PeptideAtlasiQ20206.
PRIDEiQ20206.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF40F11.1.1; F40F11.1.1; WBGene00004480.
F40F11.1.2; F40F11.1.2; WBGene00004480.
GeneIDi178083.
KEGGicel:CELE_F40F11.1.
UCSCiF40F11.1.1. c. elegans.

Organism-specific databases

CTDi178083.
WormBaseiF40F11.1; CE05860; WBGene00004480; rps-11.

Phylogenomic databases

eggNOGiKOG1728. Eukaryota.
COG0186. LUCA.
GeneTreeiENSGT00390000002732.
HOGENOMiHOG000231341.
InParanoidiQ20206.
KOiK02949.
OMAiLVTIGEC.
OrthoDBiEOG091G0QVV.
PhylomeDBiQ20206.

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-CEL-72702. Ribosomal scanning and start codon recognition.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Gene expression databases

BgeeiWBGene00004480.

Family and domain databases

HAMAPiMF_01345_B. Ribosomal_S17_B. 1 hit.
InterProiIPR012340. NA-bd_OB-fold.
IPR032440. Ribosomal_S11_N.
IPR000266. Ribosomal_S17/S11.
IPR028333. Ribosomal_S17_arc-typ.
IPR019979. Ribosomal_S17_CS.
[Graphical view]
PANTHERiPTHR10744. PTHR10744. 1 hit.
PfamiPF00366. Ribosomal_S17. 1 hit.
PF16205. Ribosomal_S17_N. 1 hit.
[Graphical view]
PRINTSiPR00973. RIBOSOMALS17.
ProDomiPD001295. Ribosomal_S17. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR03630. uS17_arch. 1 hit.
PROSITEiPS00056. RIBOSOMAL_S17. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ20206_CAEEL
AccessioniPrimary (citable) accession number: Q20206
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: November 30, 2016
This is version 137 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.