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Protein
Submitted name:

Uncharacterized protein

Gene

exc-7

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • nucleotide binding Source: InterPro
  • single-stranded RNA binding Source: WormBase

GO - Biological processi

  • epithelial cell development Source: WormBase
  • regulation of alternative mRNA splicing, via spliceosome Source: WormBase
  • regulation of neuron differentiation Source: WormBase
  • regulation of tube size Source: WormBase
Complete GO annotation...

Keywords - Ligandi

RNA-bindingSAAS annotation

Enzyme and pathway databases

ReactomeiR-CEL-450520. HuR (ELAVL1) binds and stabilizes mRNA.
R-CEL-72163. mRNA Splicing - Major Pathway.

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:exc-7Imported
ORF Names:CELE_F35H8.5Imported, F35H8.5Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome II

Organism-specific databases

WormBaseiF35H8.5; CE00983; WBGene00001368; exc-7.

Subcellular locationi

GO - Cellular componenti

  • nuclear speck Source: WormBase
Complete GO annotation...

PTM / Processingi

Proteomic databases

PaxDbiQ20084.
PeptideAtlasiQ20084.

Expressioni

Gene expression databases

BgeeiWBGene00001368.

Interactioni

Protein-protein interaction databases

DIPiDIP-27011N.
IntActiQ20084. 13 interactors.
MINTiMINT-1038844.
STRINGi6239.F35H8.5.

Structurei

3D structure databases

ProteinModelPortaliQ20084.
SMRiQ20084.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini42 – 120RRM (RNA recognition motif)InterPro annotationAdd BLAST79
Domaini128 – 208RRM (RNA recognition motif)InterPro annotationAdd BLAST81
Domaini374 – 451RRM (RNA recognition motif)InterPro annotationAdd BLAST78

Keywords - Domaini

RepeatSAAS annotation

Phylogenomic databases

eggNOGiKOG0145. Eukaryota.
ENOG410XP7S. LUCA.
GeneTreeiENSGT00760000118913.
HOGENOMiHOG000231162.
InParanoidiQ20084.
KOiK13208.
OMAiNNIDEQK.
OrthoDBiEOG091G0G9L.
PhylomeDBiQ20084.

Family and domain databases

Gene3Di3.30.70.330. 3 hits.
InterProiIPR006548. ELAD_HUD_SF.
IPR002343. Hud_Sxl_RNA.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 3 hits.
[Graphical view]
PRINTSiPR00961. HUDSXLRNA.
SMARTiSM00360. RRM. 3 hits.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 2 hits.
TIGRFAMsiTIGR01661. ELAV_HUD_SF. 1 hit.
PROSITEiPS50102. RRM. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q20084-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTMEALLTPN NNNVPTSPVQ TTYTSTQRYC SAPNVDIGES KTNLIINYLP
60 70 80 90 100
QGMTQEEVRS LFTSIGEIES CKLVRDKVTG QSLGYGFVNY VREEDALRAV
110 120 130 140 150
SSFNGLRLQN KTIKVSYARP SNDQIKGSNL YVSGIPKSMT LHELESIFRP
160 170 180 190 200
FGQIITSRIL SDNVTGLSKG VGFVRFDKKD EADVAIKTLN GSIPSGCSEQ
210 220 230 240 250
ITVKFANNPA SNNPKGLLSD LEAVQQAATT LVPLSTILGA PTLRATAGGI
260 270 280 290 300
GPMHHAPITS KYRYSPMGAI TAVSQPTATL PADYLTTSAL LQMSQLNALA
310 320 330 340 350
GLNPFATATA VPDFTASLIA HQQQQHAVAQ QHAAQTASPP ATNGQVAGLA
360 370 380 390 400
AHAQLSALSA SVAATLPPSD TAGYCLFVYN LSSDTDDTLL WQLFSQFGAI
410 420 430 440 450
VNVKILRDLT QQCKGYAFVS MSNYTEAYNA MLSLNGTNLA GKTLQVVFKS

STPYRA
Length:456
Mass (Da):48,703
Last modified:November 1, 1996 - v1
Checksum:i8E9D63C5526E6297
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284602 Genomic DNA. Translation: CAA85327.1.
PIRiT21822.
RefSeqiNP_496057.1. NM_063656.4.
UniGeneiCel.5876.

Genome annotation databases

EnsemblMetazoaiF35H8.5; F35H8.5; WBGene00001368.
GeneIDi174506.
KEGGicel:CELE_F35H8.5.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284602 Genomic DNA. Translation: CAA85327.1.
PIRiT21822.
RefSeqiNP_496057.1. NM_063656.4.
UniGeneiCel.5876.

3D structure databases

ProteinModelPortaliQ20084.
SMRiQ20084.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-27011N.
IntActiQ20084. 13 interactors.
MINTiMINT-1038844.
STRINGi6239.F35H8.5.

Proteomic databases

PaxDbiQ20084.
PeptideAtlasiQ20084.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF35H8.5; F35H8.5; WBGene00001368.
GeneIDi174506.
KEGGicel:CELE_F35H8.5.

Organism-specific databases

CTDi174506.
WormBaseiF35H8.5; CE00983; WBGene00001368; exc-7.

Phylogenomic databases

eggNOGiKOG0145. Eukaryota.
ENOG410XP7S. LUCA.
GeneTreeiENSGT00760000118913.
HOGENOMiHOG000231162.
InParanoidiQ20084.
KOiK13208.
OMAiNNIDEQK.
OrthoDBiEOG091G0G9L.
PhylomeDBiQ20084.

Enzyme and pathway databases

ReactomeiR-CEL-450520. HuR (ELAVL1) binds and stabilizes mRNA.
R-CEL-72163. mRNA Splicing - Major Pathway.

Gene expression databases

BgeeiWBGene00001368.

Family and domain databases

Gene3Di3.30.70.330. 3 hits.
InterProiIPR006548. ELAD_HUD_SF.
IPR002343. Hud_Sxl_RNA.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 3 hits.
[Graphical view]
PRINTSiPR00961. HUDSXLRNA.
SMARTiSM00360. RRM. 3 hits.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 2 hits.
TIGRFAMsiTIGR01661. ELAV_HUD_SF. 1 hit.
PROSITEiPS50102. RRM. 3 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ20084_CAEEL
AccessioniPrimary (citable) accession number: Q20084
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: November 30, 2016
This is version 136 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.