Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Uncharacterized protein

Gene

exc-7

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • single-stranded RNA binding Source: WormBase

GO - Biological processi

  • epithelial cell development Source: WormBase
  • regulation of alternative mRNA splicing, via spliceosome Source: WormBase
  • regulation of neuron differentiation Source: WormBase
  • regulation of tube size Source: WormBase

Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotationSAAS annotation

Enzyme and pathway databases

ReactomeiR-CEL-450520 HuR (ELAVL1) binds and stabilizes mRNA
R-CEL-72163 mRNA Splicing - Major Pathway

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:exc-7Imported
ORF Names:CELE_F35H8.5Imported, F35H8.5Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome II

Organism-specific databases

WormBaseiF35H8.5 ; CE00983 ; WBGene00001368 ; exc-7

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

EPDiQ20084
PaxDbiQ20084
PeptideAtlasiQ20084

Expressioni

Gene expression databases

BgeeiWBGene00001368

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
asd-2G5EFF13EBI-321225,EBI-316859

Protein-protein interaction databases

DIPiDIP-27011N
IntActiQ20084, 15 interactors
STRINGi6239.F35H8.5

Structurei

3D structure databases

ProteinModelPortaliQ20084
SMRiQ20084
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini42 – 120RRMInterPro annotationAdd BLAST79
Domaini128 – 208RRMInterPro annotationAdd BLAST81
Domaini374 – 451RRMInterPro annotationAdd BLAST78

Keywords - Domaini

RepeatSAAS annotation

Phylogenomic databases

eggNOGiKOG0145 Eukaryota
ENOG410XP7S LUCA
GeneTreeiENSGT00760000118913
HOGENOMiHOG000231162
InParanoidiQ20084
KOiK13208
OMAiGEIDSCK
OrthoDBiEOG091G0G9L
PhylomeDBiQ20084

Family and domain databases

CDDicd12650 RRM1_Hu, 1 hit
Gene3Di3.30.70.330, 3 hits
InterProiView protein in InterPro
IPR006548 ELAD_HU_SF
IPR034775 ELAV/Hu_RRM1
IPR002343 Hud_Sxl_RNA
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
PfamiView protein in Pfam
PF00076 RRM_1, 3 hits
PRINTSiPR00961 HUDSXLRNA
SMARTiView protein in SMART
SM00360 RRM, 3 hits
SUPFAMiSSF54928 SSF54928, 2 hits
TIGRFAMsiTIGR01661 ELAV_HUD_SF, 1 hit
PROSITEiView protein in PROSITE
PS50102 RRM, 3 hits

Sequencei

Sequence statusi: Complete.

Q20084-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTMEALLTPN NNNVPTSPVQ TTYTSTQRYC SAPNVDIGES KTNLIINYLP
60 70 80 90 100
QGMTQEEVRS LFTSIGEIES CKLVRDKVTG QSLGYGFVNY VREEDALRAV
110 120 130 140 150
SSFNGLRLQN KTIKVSYARP SNDQIKGSNL YVSGIPKSMT LHELESIFRP
160 170 180 190 200
FGQIITSRIL SDNVTGLSKG VGFVRFDKKD EADVAIKTLN GSIPSGCSEQ
210 220 230 240 250
ITVKFANNPA SNNPKGLLSD LEAVQQAATT LVPLSTILGA PTLRATAGGI
260 270 280 290 300
GPMHHAPITS KYRYSPMGAI TAVSQPTATL PADYLTTSAL LQMSQLNALA
310 320 330 340 350
GLNPFATATA VPDFTASLIA HQQQQHAVAQ QHAAQTASPP ATNGQVAGLA
360 370 380 390 400
AHAQLSALSA SVAATLPPSD TAGYCLFVYN LSSDTDDTLL WQLFSQFGAI
410 420 430 440 450
VNVKILRDLT QQCKGYAFVS MSNYTEAYNA MLSLNGTNLA GKTLQVVFKS

STPYRA
Length:456
Mass (Da):48,703
Last modified:November 1, 1996 - v1
Checksum:i8E9D63C5526E6297
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284602 Genomic DNA Translation: CAA85327.1
PIRiT21822
RefSeqiNP_496057.1, NM_063656.4
UniGeneiCel.5876

Genome annotation databases

EnsemblMetazoaiF35H8.5; F35H8.5; WBGene00001368
GeneIDi174506
KEGGicel:CELE_F35H8.5

Similar proteinsi

Entry informationi

Entry nameiQ20084_CAEEL
AccessioniPrimary (citable) accession number: Q20084
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: March 28, 2018
This is version 143 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health