Unreviewed, UniProtKB/TrEMBL Q20084 (Q20084_CAEEL)

Names and origin

Protein names

Submitted name:
    Protein F35H8.5, partially confirmed by transcript evidence EMBL CAA85327.1

Gene names

Name:	exc-7 EMBL CAA85327.1
ORF Names:	F35H8.5 EMBL CAA85327.1

Organism

Caenorhabditis elegans [Complete proteome]

Taxonomic identifier

6239 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Nematoda › Chromadorea › Rhabditida › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis

Protein attributes

Sequence length	456 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Molecular function	RNA binding Inferred from electronic annotation. Source: InterPro nucleotide binding Inferred from electronic annotation. Source: InterPro protein binding Inferred from physical interaction. Source: IntAct
Complete GO annotation...

Binary interactions

With	Entry	#Exp.	IntAct	Notes
	O61799	1	EBI-321225,EBI-321239
	Q21648	1	EBI-321225,EBI-314179
	Q9XU77	1	EBI-321225,EBI-311986
asd-1	Q22030	1	EBI-321225,EBI-312085
asd-2	Q7Z153	1	EBI-321225,EBI-316859
brp-1	Q9U1S2	1	EBI-321225,EBI-313822
etr-1	Q17385	1	EBI-321225,EBI-321251
imb-2	O62332	1	EBI-321225,EBI-317758
mec-8	Q19018	1	EBI-321225,EBI-317668
rad-26	Q18241	1	EBI-321225,EBI-313204

Sequences

	Sequence		Length	Mass (Da)
	Q20084-1 [UniParc]. Last modified November 1, 1996. Version 1. Checksum: 8E9D63C5526E6297	FASTA	456	48,703
	10 20 30 40 50 60 MTMEALLTPN NNNVPTSPVQ TTYTSTQRYC SAPNVDIGES KTNLIINYLP QGMTQEEVRS 70 80 90 100 110 120 LFTSIGEIES CKLVRDKVTG QSLGYGFVNY VREEDALRAV SSFNGLRLQN KTIKVSYARP 130 140 150 160 170 180 SNDQIKGSNL YVSGIPKSMT LHELESIFRP FGQIITSRIL SDNVTGLSKG VGFVRFDKKD 190 200 210 220 230 240 EADVAIKTLN GSIPSGCSEQ ITVKFANNPA SNNPKGLLSD LEAVQQAATT LVPLSTILGA 250 260 270 280 290 300 PTLRATAGGI GPMHHAPITS KYRYSPMGAI TAVSQPTATL PADYLTTSAL LQMSQLNALA 310 320 330 340 350 360 GLNPFATATA VPDFTASLIA HQQQQHAVAQ QHAAQTASPP ATNGQVAGLA AHAQLSALSA 370 380 390 400 410 420 SVAATLPPSD TAGYCLFVYN LSSDTDDTLL WQLFSQFGAI VNVKILRDLT QQCKGYAFVS 430 440 450 MSNYTEAYNA MLSLNGTNLA GKTLQVVFKS STPYRA

References

[1]	"Genome sequence of the nematode C. elegans: a platform for investigating biology." The C. elegans sequencing consortium Science 282:2012-2018(1998) [PubMed: 9851916] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Bristol N2.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBLGenBankDDBJ	Z36752 Genomic DNA. Translation: CAA85327.1.
PIR	T21822.
RefSeq	NP_496057.1.
UniGene	Cel.5876
3D structure databases
HSSP	HSSP built from PDB template 1FXL based on UniProtKB P26378.
SMR	Q20084. Positions 40-206.
ModBase	Search...
Protein-protein interaction databases
DIP	DIP:27011N.
IntAct	Q20084. 13 interactions.
Genome annotation databases
Ensembl	F35H8.5. Caenorhabditis elegans. [Contig view]
GeneID	174506.
KEGG	cel:F35H8.5.
NMPDR	fig|6239.3.peg.6960.
Organism-specific databases
WormBase	WBGene00001368. exc-7.
WormPep	F35H8.5. CE00983. [WorfDB]
Phylogenomic databases
OMA	Q20084. SFNGLRL.
Gene expression databases
ArrayExpress	Q20084.
Family and domain databases
InterPro	IPR012677. a_b_plait_nuc_bd. IPR006548. ELAD_HUD_SF. IPR002343. Hud_Sxl_RNA. IPR000504. RRM_RNP1. [Graphical view]
Gene3D	G3DSA:3.30.70.330. a_b_plait_nuc_bd. 3 hits.
Pfam	PF00076. RRM_1. 3 hits. [Graphical view]
PRINTS	PR00961. HUDSXLRNA.
SMART	SM00360. RRM. 3 hits. [Graphical view]
TIGRFAMs	TIGR01661. ELAV_HUD_SF. 1 hit.
PROSITE	PS50102. RRM. 3 hits. [Graphical view]
ProtoNet	Search...
Other Resources
NextBio	884320.

Entry information

Entry name

Q20084_CAEEL

Accession

Primary (citable) accession number: Q20084

Entry history

Integrated into UniProtKB/TrEMBL:	November 1, 1996
Last sequence update:	November 1, 1996
Last modified:	June 16, 2009
This is version 68 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)