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Protein

Putative HTH-type transcriptional regulator ycf28

Gene

ycf28

Organism
Pyropia yezoensis (Susabi-nori) (Porphyra yezoensis)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi188 – 207H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Putative HTH-type transcriptional regulator ycf28
Gene namesi
Name:ycf28
Encoded oniPlastid; Chloroplast
OrganismiPyropia yezoensis (Susabi-nori) (Porphyra yezoensis)
Taxonomic identifieri2788 [NCBI]
Taxonomic lineageiEukaryotaRhodophytaBangiophyceaeBangialesBangiaceaePyropia

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002773161 – 237Putative HTH-type transcriptional regulator ycf28Add BLAST237

Structurei

3D structure databases

ProteinModelPortaliQ1XDE5.
SMRiQ1XDE5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini155 – 228HTH crp-typePROSITE-ProRule annotationAdd BLAST74

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
2.60.120.10. 1 hit.
InterProiView protein in InterPro
IPR018490. cNMP-bd-like.
IPR000595. cNMP-bd_dom.
IPR012318. HTH_CRP.
IPR014710. RmlC-like_jellyroll.
IPR018335. Tscrpt_reg_HTH_Crp-type_CS.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF00027. cNMP_binding. 1 hit.
PF13545. HTH_Crp_2. 1 hit.
SMARTiView protein in SMART
SM00419. HTH_CRP. 1 hit.
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF51206. SSF51206. 1 hit.
PROSITEiView protein in PROSITE
PS50042. CNMP_BINDING_3. 1 hit.
PS00042. HTH_CRP_1. 1 hit.
PS51063. HTH_CRP_2. 1 hit.

Sequencei

Sequence statusi: Complete.

Q1XDE5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTKNCLNQEN CIPIFSENSS GDFFSCNPWL LFFNRNKINY QIFSLKKNDT
60 70 80 90 100
LLFNSSSRLY IILIGSLIIT KVLRNTHKVT LNLLTTGDTF GQIELVDDNF
110 120 130 140 150
YYEAEAIDKT EVACINYTTI IKACSNCAPF NLFFVNHLVF CSAKAYHFIE
160 170 180 190 200
IISHKSITSR LASLLLLLAE QNGTQVNNGI MLNFTITHKI LAQIIGSNRV
210 220 230
SVTRILANLL KTKLISIQKK RIIVHSPVLL SQRILNQ
Length:237
Mass (Da):26,895
Last modified:May 2, 2006 - v1
Checksum:i2B2663DA80553A46
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP006715 Genomic DNA. Translation: BAE92466.1.
RefSeqiYP_537023.1. NC_007932.1.

Genome annotation databases

GeneIDi3978799.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiYCF28_PYRYE
AccessioniPrimary (citable) accession number: Q1XDE5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 6, 2007
Last sequence update: May 2, 2006
Last modified: July 5, 2017
This is version 52 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)