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Q1XDE5 (YCF28_PYRYE) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 41. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Putative HTH-type transcriptional regulator ycf28
Gene names
Name:ycf28
Encoded onPlastid; Chloroplast
OrganismPyropia yezoensis (Red alga) (Porphyra yezoensis)
Taxonomic identifier2788 [NCBI]
Taxonomic lineageEukaryotaRhodophytaBangiophyceaeBangialesBangiaceaePyropia

Protein attributes

Sequence length237 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Subcellular location

Plastidchloroplast.

Sequence similarities

Contains 1 cyclic nucleotide-binding domain.

Contains 1 HTH crp-type DNA-binding domain.

Ontologies

Keywords
   Biological processTranscription
Transcription regulation
   Cellular componentChloroplast
Plastid
   LigandDNA-binding
Gene Ontology (GO)
   Biological_processtranscription, DNA-templated

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentchloroplast

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionDNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

sequence-specific DNA binding transcription factor activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 237237Putative HTH-type transcriptional regulator ycf28
PRO_0000277316

Regions

Domain155 – 22874HTH crp-type
DNA binding188 – 20720H-T-H motif By similarity

Sequences

Sequence LengthMass (Da)Tools
Q1XDE5 [UniParc].

Last modified May 2, 2006. Version 1.
Checksum: 2B2663DA80553A46

FASTA23726,895
        10         20         30         40         50         60 
MTKNCLNQEN CIPIFSENSS GDFFSCNPWL LFFNRNKINY QIFSLKKNDT LLFNSSSRLY 

        70         80         90        100        110        120 
IILIGSLIIT KVLRNTHKVT LNLLTTGDTF GQIELVDDNF YYEAEAIDKT EVACINYTTI 

       130        140        150        160        170        180 
IKACSNCAPF NLFFVNHLVF CSAKAYHFIE IISHKSITSR LASLLLLLAE QNGTQVNNGI 

       190        200        210        220        230 
MLNFTITHKI LAQIIGSNRV SVTRILANLL KTKLISIQKK RIIVHSPVLL SQRILNQ 

« Hide

References

[1]"Whole genome sequence of Porphyra yezoensis chloroplast."
Kunimoto M., Morishima K., Yoshikawa M., Fukuda S., Kobayashi T., Kobayashi M., Okazaki T., Ohara I., Nakayama I.
Submitted (NOV-2003) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: U-51.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP006715 Genomic DNA. Translation: BAE92466.1.
RefSeqYP_537023.1. NC_007932.1.

3D structure databases

ProteinModelPortalQ1XDE5.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID3978799.

Phylogenomic databases

ProtClustDBCLSC2491350.

Family and domain databases

Gene3D1.10.10.10. 1 hit.
2.60.120.10. 1 hit.
InterProIPR018490. cNMP-bd-like.
IPR000595. cNMP-bd_dom.
IPR012318. HTH_CRP_2.
IPR014710. RmlC-like_jellyroll.
IPR001808. Tscrpt_reg_HTH_Crp.
IPR018335. Tscrpt_reg_HTH_Crp-type_CS.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamPF00027. cNMP_binding. 1 hit.
[Graphical view]
SMARTSM00419. HTH_CRP. 1 hit.
[Graphical view]
SUPFAMSSF51206. SSF51206. 1 hit.
PROSITEPS50042. CNMP_BINDING_3. 1 hit.
PS00042. HTH_CRP_1. 1 hit.
PS51063. HTH_CRP_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameYCF28_PYRYE
AccessionPrimary (citable) accession number: Q1XDE5
Entry history
Integrated into UniProtKB/Swiss-Prot: February 6, 2007
Last sequence update: May 2, 2006
Last modified: February 19, 2014
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)

Relevant documents

SIMILARITY comments

Index of protein domains and families