Q1RKJ9 (RECF_RICBR) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
DNA replication and repair protein RecF

Gene names

Name:	recF
Ordered Locus Names:	RBE_0034

Organism

Rickettsia bellii (strain RML369-C) [Complete proteome] [HAMAP]

Taxonomic identifier

336407 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rickettsiales › Rickettsiaceae › Rickettsieae › Rickettsia › belli group › Rickettsia bellii

Protein attributes

Sequence length	360 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP By similarity. HAMAP-Rule MF_00365
Subcellular location	Cytoplasm By similarity.
Sequence similarities	Belongs to the RecF family.

Ontologies

Keywords
Biological process	DNA damage DNA repair DNA replication SOS response
Cellular component	Cytoplasm
Ligand	ATP-binding DNA-binding Nucleotide-binding
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA repair Inferred from electronic annotation. Source: HAMAP DNA replication Inferred from electronic annotation. Source: HAMAP SOS response Inferred from electronic annotation. Source: HAMAP
Cellular_component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	ATP binding Inferred from electronic annotation. Source: HAMAP single-stranded DNA binding Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 360	360	DNA replication and repair protein RecF HAMAP-Rule MF_00365		PRO_0000286658
Regions
	Nucleotide binding	33 – 40	8	ATP Potential

Sequences

	Sequence		Length	Mass (Da)
	Q1RKJ9 [UniParc]. Last modified May 16, 2006. Version 1. Checksum: 831BB0F13EEA66D2	FASTA	360	41,579
	10 20 30 40 50 60 MKNIFLHSLI VENYRNFKNL ELKTDNIPIT IIGENGSGKT NILEAISLFY PGRGLRSARL 70 80 90 100 110 120 ADICRESEDH CSVRALLQSK LGLAEFSTQI KRISNRRTTE YNNSKIANNE LSKFTSMVWL 130 140 150 160 170 180 TPQMEGIFTS GTSDRRKFFD RIVYNFDPKH AELVSKYEHY MQERNKILAE DMWDNNWLKT 190 200 210 220 230 240 IEEKMADTSI YIANNRLKTL EFMQQAIDDL ENEFPKAELS IDGMVEQKIL NGEEDVVGFI 250 260 270 280 290 300 AAELHKTRDK DKLLGRTSFG VHKSDFLVKH KHKNILAKFC STGEQKAILI AIILAEMNYA 310 320 330 340 350 360 IKLTKTAPIL LLDEVFVHLD DRRRNYLTEF FISINLQLWV TATDLKGIEE FGNKSQLIKL

References

[1]

"Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens." Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D. PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: RML369-C.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000087 Genomic DNA. Translation: ABE04115.1.
RefSeq	YP_537204.1. NC_007940.1.
3D structure databases
ProteinModelPortal	Q1RKJ9.
ModBase	Search...
Protein-protein interaction databases
STRING	336407.RBE_0034.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABE04115; ABE04115; RBE_0034.
GeneID	3996081.
KEGG	rbe:RBE_0034.
PATRIC	17881307. VBIRicBel102610_0038.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1195.
HOGENOM	HOG000269558.
KO	K03629.
OMA	PKRIYVN.
ProtClustDB	PRK00064.
Enzyme and pathway databases
BioCyc	RBEL336407:GJCY-35-MONOMER.
Family and domain databases
HAMAP	MF_00365. RecF.
InterPro	IPR001238. DNA-binding_RecF. IPR018078. DNA-binding_RecF_CS. IPR003395. RecF/RecN/SMC. [Graphical view]
Pfam	PF02463. SMC_N. 1 hit. [Graphical view]
TIGRFAMs	TIGR00611. recf. 1 hit.
PROSITE	PS00617. RECF_1. False negative. PS00618. RECF_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RECF_RICBR

Accession

Primary (citable) accession number: Q1RKJ9

Entry history

Integrated into UniProtKB/Swiss-Prot:	May 15, 2007
Last sequence update:	May 16, 2006
Last modified:	May 1, 2013
This is version 50 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program