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Q1RKJ9 (RECF_RICBR) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 57. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
DNA replication and repair protein RecF
Gene names
Name:recF
Ordered Locus Names:RBE_0034
OrganismRickettsia bellii (strain RML369-C) [Complete proteome] [HAMAP]
Taxonomic identifier336407 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiabelli group

Protein attributes

Sequence length360 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP By similarity. HAMAP-Rule MF_00365

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00365.

Sequence similarities

Belongs to the RecF family.

Ontologies

Keywords
   Biological processDNA damage
DNA repair
DNA replication
SOS response
   Cellular componentCytoplasm
   LigandATP-binding
DNA-binding
Nucleotide-binding
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA repair

Inferred from electronic annotation. Source: UniProtKB-HAMAP

DNA replication

Inferred from electronic annotation. Source: UniProtKB-HAMAP

SOS response

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionATP binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

single-stranded DNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 360360DNA replication and repair protein RecF HAMAP-Rule MF_00365
PRO_0000286658

Regions

Nucleotide binding33 – 408ATP Potential

Sequences

Sequence LengthMass (Da)Tools
Q1RKJ9 [UniParc].

Last modified May 16, 2006. Version 1.
Checksum: 831BB0F13EEA66D2

FASTA36041,579
        10         20         30         40         50         60 
MKNIFLHSLI VENYRNFKNL ELKTDNIPIT IIGENGSGKT NILEAISLFY PGRGLRSARL 

        70         80         90        100        110        120 
ADICRESEDH CSVRALLQSK LGLAEFSTQI KRISNRRTTE YNNSKIANNE LSKFTSMVWL 

       130        140        150        160        170        180 
TPQMEGIFTS GTSDRRKFFD RIVYNFDPKH AELVSKYEHY MQERNKILAE DMWDNNWLKT 

       190        200        210        220        230        240 
IEEKMADTSI YIANNRLKTL EFMQQAIDDL ENEFPKAELS IDGMVEQKIL NGEEDVVGFI 

       250        260        270        280        290        300 
AAELHKTRDK DKLLGRTSFG VHKSDFLVKH KHKNILAKFC STGEQKAILI AIILAEMNYA 

       310        320        330        340        350        360 
IKLTKTAPIL LLDEVFVHLD DRRRNYLTEF FISINLQLWV TATDLKGIEE FGNKSQLIKL 

« Hide

References

[1]"Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: RML369-C.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000087 Genomic DNA. Translation: ABE04115.1.
RefSeqYP_537204.1. NC_007940.1.

3D structure databases

ProteinModelPortalQ1RKJ9.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING336407.RBE_0034.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABE04115; ABE04115; RBE_0034.
GeneID3996081.
KEGGrbe:RBE_0034.
PATRIC17881307. VBIRicBel102610_0038.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1195.
HOGENOMHOG000269558.
KOK03629.
OMAHVVFTGH.
OrthoDBEOG6HTP3X.

Enzyme and pathway databases

BioCycRBEL336407:GJCY-35-MONOMER.

Family and domain databases

Gene3D3.40.50.300. 2 hits.
HAMAPMF_00365. RecF.
InterProIPR001238. DNA-binding_RecF.
IPR018078. DNA-binding_RecF_CS.
IPR027417. P-loop_NTPase.
IPR003395. RecF/RecN/SMC_N.
[Graphical view]
PfamPF02463. SMC_N. 1 hit.
[Graphical view]
SUPFAMSSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00611. recf. 1 hit.
PROSITEPS00618. RECF_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRECF_RICBR
AccessionPrimary (citable) accession number: Q1RKJ9
Entry history
Integrated into UniProtKB/Swiss-Prot: May 15, 2007
Last sequence update: May 16, 2006
Last modified: May 14, 2014
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rickettsia bellii strain RML369-C

Rickettsia bellii (strain RML369-C): entries and gene names