Reviewed, UniProtKB/Swiss-Prot Q1RKJ9 (RECF_RICBR)

Names and origin

Protein names

Recommended name:
    DNA replication and repair protein recF

Gene names

Name:	recF
Ordered Locus Names:	RBE_0034

Organism

Rickettsia bellii (strain RML369-C) [Complete proteome] [HAMAP]

Taxonomic identifier

336407 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rickettsiales › Rickettsiaceae › Rickettsieae › Rickettsia

Protein attributes

Sequence length	360 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	The recF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP By similarity.
Subcellular location	Cytoplasm By similarity.
Sequence similarities	Belongs to the recF family.

Ontologies

Keywords
Biological process	DNA damage DNA repair DNA replication SOS response
Cellular component	Cytoplasm
Ligand	ATP-binding DNA-binding Nucleotide-binding
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	DNA repair Inferred from electronic annotation. Source: HAMAP DNA replication Inferred from electronic annotation. Source: HAMAP SOS response Inferred from electronic annotation. Source: HAMAP
Cellular component	chromosome Inferred from electronic annotation. Source: InterPro cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	ATP binding Inferred from electronic annotation. Source: HAMAP single-stranded DNA binding Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 360	360	DNA replication and repair protein recF HAMAP MF_00365		PRO_0000286658
Regions
	Nucleotide binding	33 – 40	8	ATP Potential

Sequences

	Sequence		Length	Mass (Da)
	Q1RKJ9-1 [UniParc]. Last modified May 16, 2006. Version 1. Checksum: 831BB0F13EEA66D2	FASTA	360	41,579
	10 20 30 40 50 60 MKNIFLHSLI VENYRNFKNL ELKTDNIPIT IIGENGSGKT NILEAISLFY PGRGLRSARL 70 80 90 100 110 120 ADICRESEDH CSVRALLQSK LGLAEFSTQI KRISNRRTTE YNNSKIANNE LSKFTSMVWL 130 140 150 160 170 180 TPQMEGIFTS GTSDRRKFFD RIVYNFDPKH AELVSKYEHY MQERNKILAE DMWDNNWLKT 190 200 210 220 230 240 IEEKMADTSI YIANNRLKTL EFMQQAIDDL ENEFPKAELS IDGMVEQKIL NGEEDVVGFI 250 260 270 280 290 300 AAELHKTRDK DKLLGRTSFG VHKSDFLVKH KHKNILAKFC STGEQKAILI AIILAEMNYA 310 320 330 340 350 360 IKLTKTAPIL LLDEVFVHLD DRRRNYLTEF FISINLQLWV TATDLKGIEE FGNKSQLIKL

References

[1]

"Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens." Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D. PLoS Genet. 2:733-744(2006) [PubMed: 16703114] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	CP000087 Genomic DNA. Translation: ABE04115.1.
RefSeq	YP_537204.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	Q1RKJ9.
Genome annotation databases
GeneID	3996081.
GenomeReviews	Gene locus RBE_0034 in contig CP000087_GR.
KEGG	rbe:RBE_0034.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	Q1RKJ9.
OMA	IWLTPAQ
Enzyme and pathway databases
BioCyc	RBEL336407:RBE_0034-MON.
Family and domain databases
HAMAP	MF_00365. [Tree]
InterPro	IPR001238. DNA-binding_RecF. IPR018078. DNA-binding_RecF_CS. IPR003395. RecF/RecN/SMC_N. [Graphical view]
Pfam	PF02463. SMC_N. 1 hit. [Graphical view]
TIGRFAMs	TIGR00611. recf. 1 hit.
PROSITE	PS00617. RECF_1. False negative. PS00618. RECF_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RECF_RICBR

Accession

Primary (citable) accession number: Q1RKJ9

Entry history

Integrated into UniProtKB/Swiss-Prot:	May 15, 2007
Last sequence update:	May 16, 2006
Last modified:	November 24, 2009
This is version 25 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)