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Q1RKJ9

- RECF_RICBR

UniProt

Q1RKJ9 - RECF_RICBR

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Protein

DNA replication and repair protein RecF

Gene
recF, RBE_0034
Organism
Rickettsia bellii (strain RML369-C)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP By similarity.UniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi33 – 408ATP Reviewed prediction

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-HAMAP
  2. single-stranded DNA binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. DNA repair Source: UniProtKB-HAMAP
  2. DNA replication Source: UniProtKB-HAMAP
  3. SOS response Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Biological processi

DNA damage, DNA repair, DNA replication, SOS response

Keywords - Ligandi

ATP-binding, DNA-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciRBEL336407:GJCY-35-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA replication and repair protein RecF
Gene namesi
Name:recF
Ordered Locus Names:RBE_0034
OrganismiRickettsia bellii (strain RML369-C)
Taxonomic identifieri336407 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiabelli group
ProteomesiUP000001951: Chromosome

Subcellular locationi

Cytoplasm By similarity UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 360360DNA replication and repair protein RecFUniRule annotationPRO_0000286658Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi336407.RBE_0034.

Structurei

3D structure databases

ProteinModelPortaliQ1RKJ9.

Family & Domainsi

Sequence similaritiesi

Belongs to the RecF family.

Phylogenomic databases

eggNOGiCOG1195.
HOGENOMiHOG000269558.
KOiK03629.
OMAiHVVFTGH.
OrthoDBiEOG6HTP3X.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
HAMAPiMF_00365. RecF.
InterProiIPR001238. DNA-binding_RecF.
IPR018078. DNA-binding_RecF_CS.
IPR027417. P-loop_NTPase.
IPR003395. RecF/RecN/SMC_N.
[Graphical view]
PfamiPF02463. SMC_N. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR00611. recf. 1 hit.
PROSITEiPS00618. RECF_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q1RKJ9-1 [UniParc]FASTAAdd to Basket

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MKNIFLHSLI VENYRNFKNL ELKTDNIPIT IIGENGSGKT NILEAISLFY    50
PGRGLRSARL ADICRESEDH CSVRALLQSK LGLAEFSTQI KRISNRRTTE 100
YNNSKIANNE LSKFTSMVWL TPQMEGIFTS GTSDRRKFFD RIVYNFDPKH 150
AELVSKYEHY MQERNKILAE DMWDNNWLKT IEEKMADTSI YIANNRLKTL 200
EFMQQAIDDL ENEFPKAELS IDGMVEQKIL NGEEDVVGFI AAELHKTRDK 250
DKLLGRTSFG VHKSDFLVKH KHKNILAKFC STGEQKAILI AIILAEMNYA 300
IKLTKTAPIL LLDEVFVHLD DRRRNYLTEF FISINLQLWV TATDLKGIEE 350
FGNKSQLIKL 360
Length:360
Mass (Da):41,579
Last modified:May 16, 2006 - v1
Checksum:i831BB0F13EEA66D2
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000087 Genomic DNA. Translation: ABE04115.1.
RefSeqiWP_011476730.1. NC_007940.1.
YP_537204.1. NC_007940.1.

Genome annotation databases

EnsemblBacteriaiABE04115; ABE04115; RBE_0034.
GeneIDi3996081.
KEGGirbe:RBE_0034.
PATRICi17881307. VBIRicBel102610_0038.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000087 Genomic DNA. Translation: ABE04115.1 .
RefSeqi WP_011476730.1. NC_007940.1.
YP_537204.1. NC_007940.1.

3D structure databases

ProteinModelPortali Q1RKJ9.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 336407.RBE_0034.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABE04115 ; ABE04115 ; RBE_0034 .
GeneIDi 3996081.
KEGGi rbe:RBE_0034.
PATRICi 17881307. VBIRicBel102610_0038.

Phylogenomic databases

eggNOGi COG1195.
HOGENOMi HOG000269558.
KOi K03629.
OMAi HVVFTGH.
OrthoDBi EOG6HTP3X.

Enzyme and pathway databases

BioCyci RBEL336407:GJCY-35-MONOMER.

Family and domain databases

Gene3Di 3.40.50.300. 2 hits.
HAMAPi MF_00365. RecF.
InterProi IPR001238. DNA-binding_RecF.
IPR018078. DNA-binding_RecF_CS.
IPR027417. P-loop_NTPase.
IPR003395. RecF/RecN/SMC_N.
[Graphical view ]
Pfami PF02463. SMC_N. 1 hit.
[Graphical view ]
SUPFAMi SSF52540. SSF52540. 1 hit.
TIGRFAMsi TIGR00611. recf. 1 hit.
PROSITEi PS00618. RECF_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
    Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
    PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RML369-C.

Entry informationi

Entry nameiRECF_RICBR
AccessioniPrimary (citable) accession number: Q1RKJ9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 15, 2007
Last sequence update: May 16, 2006
Last modified: September 3, 2014
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Rickettsia bellii strain RML369-C
    Rickettsia bellii (strain RML369-C): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi