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Q1RKJ9

- RECF_RICBR

UniProt

Q1RKJ9 - RECF_RICBR

Protein

DNA replication and repair protein RecF

Gene

recF

Organism
Rickettsia bellii (strain RML369-C)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 59 (01 Oct 2014)
      Sequence version 1 (16 May 2006)
      Previous versions | rss
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    Functioni

    The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP By similarity.By similarity

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi33 – 408ATPSequence Analysis

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-HAMAP
    2. single-stranded DNA binding Source: UniProtKB-HAMAP

    GO - Biological processi

    1. DNA repair Source: UniProtKB-HAMAP
    2. DNA replication Source: UniProtKB-HAMAP
    3. SOS response Source: UniProtKB-HAMAP

    Keywords - Biological processi

    DNA damage, DNA repair, DNA replication, SOS response

    Keywords - Ligandi

    ATP-binding, DNA-binding, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciRBEL336407:GJCY-35-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA replication and repair protein RecF
    Gene namesi
    Name:recF
    Ordered Locus Names:RBE_0034
    OrganismiRickettsia bellii (strain RML369-C)
    Taxonomic identifieri336407 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiabelli group
    ProteomesiUP000001951: Chromosome

    Subcellular locationi

    Cytoplasm By similarity

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 360360DNA replication and repair protein RecFPRO_0000286658Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi336407.RBE_0034.

    Structurei

    3D structure databases

    ProteinModelPortaliQ1RKJ9.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the RecF family.Curated

    Phylogenomic databases

    eggNOGiCOG1195.
    HOGENOMiHOG000269558.
    KOiK03629.
    OMAiHVVFTGH.
    OrthoDBiEOG6HTP3X.

    Family and domain databases

    Gene3Di3.40.50.300. 2 hits.
    HAMAPiMF_00365. RecF.
    InterProiIPR001238. DNA-binding_RecF.
    IPR018078. DNA-binding_RecF_CS.
    IPR027417. P-loop_NTPase.
    IPR003395. RecF/RecN/SMC_N.
    [Graphical view]
    PfamiPF02463. SMC_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF52540. SSF52540. 1 hit.
    TIGRFAMsiTIGR00611. recf. 1 hit.
    PROSITEiPS00618. RECF_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q1RKJ9-1 [UniParc]FASTAAdd to Basket

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    MKNIFLHSLI VENYRNFKNL ELKTDNIPIT IIGENGSGKT NILEAISLFY    50
    PGRGLRSARL ADICRESEDH CSVRALLQSK LGLAEFSTQI KRISNRRTTE 100
    YNNSKIANNE LSKFTSMVWL TPQMEGIFTS GTSDRRKFFD RIVYNFDPKH 150
    AELVSKYEHY MQERNKILAE DMWDNNWLKT IEEKMADTSI YIANNRLKTL 200
    EFMQQAIDDL ENEFPKAELS IDGMVEQKIL NGEEDVVGFI AAELHKTRDK 250
    DKLLGRTSFG VHKSDFLVKH KHKNILAKFC STGEQKAILI AIILAEMNYA 300
    IKLTKTAPIL LLDEVFVHLD DRRRNYLTEF FISINLQLWV TATDLKGIEE 350
    FGNKSQLIKL 360
    Length:360
    Mass (Da):41,579
    Last modified:May 16, 2006 - v1
    Checksum:i831BB0F13EEA66D2
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000087 Genomic DNA. Translation: ABE04115.1.
    RefSeqiWP_011476730.1. NC_007940.1.
    YP_537204.1. NC_007940.1.

    Genome annotation databases

    EnsemblBacteriaiABE04115; ABE04115; RBE_0034.
    GeneIDi3996081.
    KEGGirbe:RBE_0034.
    PATRICi17881307. VBIRicBel102610_0038.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000087 Genomic DNA. Translation: ABE04115.1 .
    RefSeqi WP_011476730.1. NC_007940.1.
    YP_537204.1. NC_007940.1.

    3D structure databases

    ProteinModelPortali Q1RKJ9.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 336407.RBE_0034.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABE04115 ; ABE04115 ; RBE_0034 .
    GeneIDi 3996081.
    KEGGi rbe:RBE_0034.
    PATRICi 17881307. VBIRicBel102610_0038.

    Phylogenomic databases

    eggNOGi COG1195.
    HOGENOMi HOG000269558.
    KOi K03629.
    OMAi HVVFTGH.
    OrthoDBi EOG6HTP3X.

    Enzyme and pathway databases

    BioCyci RBEL336407:GJCY-35-MONOMER.

    Family and domain databases

    Gene3Di 3.40.50.300. 2 hits.
    HAMAPi MF_00365. RecF.
    InterProi IPR001238. DNA-binding_RecF.
    IPR018078. DNA-binding_RecF_CS.
    IPR027417. P-loop_NTPase.
    IPR003395. RecF/RecN/SMC_N.
    [Graphical view ]
    Pfami PF02463. SMC_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF52540. SSF52540. 1 hit.
    TIGRFAMsi TIGR00611. recf. 1 hit.
    PROSITEi PS00618. RECF_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
      Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
      PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: RML369-C.

    Entry informationi

    Entry nameiRECF_RICBR
    AccessioniPrimary (citable) accession number: Q1RKJ9
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 15, 2007
    Last sequence update: May 16, 2006
    Last modified: October 1, 2014
    This is version 59 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Rickettsia bellii strain RML369-C
      Rickettsia bellii (strain RML369-C): entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3