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Q1RKE1

- ATPD_RICBR

UniProt

Q1RKE1 - ATPD_RICBR

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Protein

ATP synthase subunit delta

Gene

atpH

Organism
Rickettsia bellii (strain RML369-C)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

F1F0 ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F1 containing the extramembraneous catalytic core and F0 containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F1 is coupled via a rotary mechanism of the central stalk subunits to proton translocation.UniRule annotation
This protein is part of the stalk that links CF0 to CF1. It either transmits conformational changes from CF0 to CF1 or is implicated in proton conduction.UniRule annotation

GO - Molecular functioni

  1. proton-transporting ATP synthase activity, rotational mechanism Source: UniProtKB-HAMAP

GO - Biological processi

  1. plasma membrane ATP synthesis coupled proton transport Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Biological processi

ATP synthesis, Hydrogen ion transport, Ion transport, Transport

Enzyme and pathway databases

BioCyciRBEL336407:GJCY-94-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
ATP synthase subunit deltaUniRule annotation
Alternative name(s):
ATP synthase F(1) sector subunit deltaUniRule annotation
F-type ATPase subunit deltaUniRule annotation
Short name:
F-ATPase subunit deltaUniRule annotation
Gene namesi
Name:atpHUniRule annotation
Ordered Locus Names:RBE_0092
OrganismiRickettsia bellii (strain RML369-C)
Taxonomic identifieri336407 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiabelli group
ProteomesiUP000001951: Chromosome

Subcellular locationi

Cell inner membrane UniRule annotation; Peripheral membrane protein UniRule annotation

GO - Cellular componenti

  1. plasma membrane Source: UniProtKB-HAMAP
  2. proton-transporting ATP synthase complex, catalytic core F(1) Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, CF(1), Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 189189ATP synthase subunit deltaPRO_0000288725Add
BLAST

Interactioni

Subunit structurei

F-type ATPases have 2 components, F1 - the catalytic core - and F0 - the membrane proton channel. F1 has five subunits: alpha3, beta3, gamma1, delta1, epsilon1. F0 has three main subunits: a1, b2 and c(10-14). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. F1 is attached to F0 by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta and b chains.UniRule annotation

Protein-protein interaction databases

STRINGi336407.RBE_0092.

Structurei

3D structure databases

ProteinModelPortaliQ1RKE1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ATPase delta chain family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0712.
HOGENOMiHOG000034193.
KOiK02113.
OMAiHILEEIF.
OrthoDBiEOG6DNTDK.

Family and domain databases

Gene3Di1.10.520.20. 1 hit.
HAMAPiMF_01416. ATP_synth_delta_bact.
InterProiIPR026015. ATPase_OSCP/delta_N.
IPR000711. ATPase_OSCP/dsu.
[Graphical view]
PANTHERiPTHR11910. PTHR11910. 1 hit.
PfamiPF00213. OSCP. 1 hit.
[Graphical view]
PRINTSiPR00125. ATPASEDELTA.
SUPFAMiSSF47928. SSF47928. 1 hit.
TIGRFAMsiTIGR01145. ATP_synt_delta. 1 hit.

Sequencei

Sequence statusi: Complete.

Q1RKE1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MNKDILTQNY AVALFDNAKS DNTQDKILEE VNLVTSIIED NIEVKELLSS
60 70 80 90 100
PIVNKVDKIG VINSLVKNIK ISKIMQNFLL LLIKNSRTSI LADIANTYSK
110 120 130 140 150
LLYESKNIKI VQVISANKLK PTEQEWVKTN IEKELKQETK INFEIDPTIM
160 170 180
GGIVIKYDSI LQDYSIKGSL DKIAKALQSV NVFDCHPVA
Length:189
Mass (Da):21,294
Last modified:May 16, 2006 - v1
Checksum:i7DC133CC89BE2055
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000087 Genomic DNA. Translation: ABE04173.1.
RefSeqiWP_011476788.1. NC_007940.1.
YP_537262.1. NC_007940.1.

Genome annotation databases

EnsemblBacteriaiABE04173; ABE04173; RBE_0092.
GeneIDi3995626.
KEGGirbe:RBE_0092.
PATRICi17881435. VBIRicBel102610_0102.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000087 Genomic DNA. Translation: ABE04173.1 .
RefSeqi WP_011476788.1. NC_007940.1.
YP_537262.1. NC_007940.1.

3D structure databases

ProteinModelPortali Q1RKE1.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 336407.RBE_0092.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABE04173 ; ABE04173 ; RBE_0092 .
GeneIDi 3995626.
KEGGi rbe:RBE_0092.
PATRICi 17881435. VBIRicBel102610_0102.

Phylogenomic databases

eggNOGi COG0712.
HOGENOMi HOG000034193.
KOi K02113.
OMAi HILEEIF.
OrthoDBi EOG6DNTDK.

Enzyme and pathway databases

BioCyci RBEL336407:GJCY-94-MONOMER.

Family and domain databases

Gene3Di 1.10.520.20. 1 hit.
HAMAPi MF_01416. ATP_synth_delta_bact.
InterProi IPR026015. ATPase_OSCP/delta_N.
IPR000711. ATPase_OSCP/dsu.
[Graphical view ]
PANTHERi PTHR11910. PTHR11910. 1 hit.
Pfami PF00213. OSCP. 1 hit.
[Graphical view ]
PRINTSi PR00125. ATPASEDELTA.
SUPFAMi SSF47928. SSF47928. 1 hit.
TIGRFAMsi TIGR01145. ATP_synt_delta. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
    Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
    PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RML369-C.

Entry informationi

Entry nameiATPD_RICBR
AccessioniPrimary (citable) accession number: Q1RKE1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 29, 2007
Last sequence update: May 16, 2006
Last modified: October 29, 2014
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Rickettsia bellii strain RML369-C
    Rickettsia bellii (strain RML369-C): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3