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Reviewed, UniProtKB/Swiss-Prot Q1RKD7 (ATPB_RICBR)

Last modified November 24, 2009. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

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Names and origin

Protein namesRecommended name:
    ATP synthase subunit beta
    EC=3.6.3.14
Alternative name(s):
    F-ATPase subunit beta
    ATP synthase F1 sector subunit beta
Gene names
Name: atpD
Ordered Locus Names: RBE_0096
OrganismRickettsia bellii (strain RML369-C) [Complete proteome] [HAMAP]
Taxonomic identifier336407 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rickettsiales › Rickettsiaceae › Rickettsieae › Rickettsia

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Protein attributes

Sequence length473 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceInferred from homology.

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General annotation (Comments)

Function

Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits By similarity.

Catalytic activity

ATP + H2O + H+(In) = ADP + phosphate + H+(Out). HAMAP MF_01347

Subunit structure

F-type ATPases have 2 components, CF1 - the catalytic core - and CF0 - the membrane proton channel. CF1 has five subunits: alpha3, beta3, gamma1, delta1, epsilon1. CF0 has three main subunits: a1, b2 and c(9-12). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. CF1 is attached to CF0 by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta and b chains By similarity.

Subcellular location

Cell inner membrane; Peripheral membrane protein By similarity.

Sequence similarities

Belongs to the ATPase alpha/beta chains family.

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Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 473473ATP synthase subunit beta HAMAP MF_01347
PRO_0000254362

Regions

Nucleotide binding153 – 1608ATP By similarity

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Sequences

Sequence LengthMass (Da)Tools
Q1RKD7-1 [UniParc].

Last modified May 16, 2006. Version 1.
Checksum: 7D613C04E182B855

FASTA47351,113
        10         20         30         40         50         60 
MKKNIGKITQ IISAVVDVKF TNKGKLPQIL NALECYNDKQ RIVLEIAQHI GDDTVRCIAM 

        70         80         90        100        110        120 
NSTEGLVRGM EVVDTGSPIS IPVGIETLGR IMNVVGEPID GKGKIKGSSI SSIYKSAPSF 

       130        140        150        160        170        180 
TQQSTDRNIL VTGIKVVDLL APYTKGGKIG LFGGAGVGKT VLIMELINNV AKAHGGYTVF 

       190        200        210        220        230        240 
AGVGERTREG NDLYHEMIDS GVINLEEPEK SKVALVYGQM NEPPGARARV ALTGLTVAES 

       250        260        270        280        290        300 
FRDMNEGQDV LFFVDNIFRF TQAGSEVSAL LGRIPSAVGY QPTLATDMGE LQERITSTKH 

       310        320        330        340        350        360 
GSITSVQAIY VPADDLTDPA PATSFAHLDA TTVLSRQIAE LGIYPAVDPL DSTSQVLDPM 

       370        380        390        400        410        420 
IVGEEHYNVA RKVQQILQTY KSLQDIIAIL GMDELSEEDK LTVSRARKIQ RFLSQPFHVA 

       430        440        450        460        470 
EVFTGAEGKF VNLADTIAGF KGLTEGKYDD LPEAAFYMVG TIEEALEKAK TLK

« Hide

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References

[1]"Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
PLoS Genet. 2:733-744(2006) [PubMed: 16703114] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

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Cross-references

Sequence databases

CP000087 Genomic DNA. Translation: ABE04177.1.
RefSeqYP_537266.1.

3D structure databases

HSSPHSSP built from PDB template 2F43 based on UniProtKB P10719.
SMRQ1RKD7. Positions 6-472.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ1RKD7.

Genome annotation databases

GeneID3995630.
GenomeReviewsGene locus RBE_0096 in contig CP000087_GR.
KEGGrbe:RBE_0096.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMQ1RKD7.
OMAHYKTARA

Enzyme and pathway databases

BioCycRBEL336407:RBE_0096-MON.

Family and domain databases

HAMAPMF_01347.
[Tree]
InterProIPR003593. ATPase_AAA+_core.
IPR005722. ATPase_F1-cplx_bsu.
IPR018118. ATPase_F1/A1-cplx_a/bsu_N.
IPR000793. ATPase_F1/V1/A1-cplx_a/bsu_C.
IPR004100. ATPase_F1/V1/A1-cplx_a/bsu_N.
IPR020003. ATPase_F1/V1/A1_a/bsu_AS.
IPR000194. ATPase_F1/V1/A1_a/bsu_nucl-bd.
[Graphical view]
PANTHERPTHR15184:SF8. ATPase_F1_b. 1 hit.
PfamPF00006. ATP-synt_ab. 1 hit.
PF00306. ATP-synt_ab_C. 1 hit.
PF02874. ATP-synt_ab_N. 1 hit.
[Graphical view]
SMARTSM00382. AAA. 1 hit.
[Graphical view]
TIGRFAMsTIGR01039. atpD. 1 hit.
PROSITEPS00152. ATPASE_ALPHA_BETA. 1 hit.
[Graphical view]
ProtoNetSearch...

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Entry information

Entry nameATPB_RICBR
AccessionPrimary (citable) accession number: Q1RKD7
Entry history
Integrated into UniProtKB/Swiss-Prot: October 31, 2006
Last sequence update: May 16, 2006
Last modified: November 24, 2009
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

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Relevant documents

Rickettsia bellii strain RML369-C

Rickettsia bellii (strain RML369-C): entries and gene names

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents