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Reviewed, UniProtKB/Swiss-Prot Q1RKB1 (RS6_RICBR)

Last modified December 15, 2009. Version 25. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    30S ribosomal protein S6
Gene names
Name: rpsF
Ordered Locus Names: RBE_0122
OrganismRickettsia bellii (strain RML369-C) [Complete proteome] [HAMAP]
Taxonomic identifier336407 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsia

Protein attributes

Sequence length120 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceInferred from homology.

General annotation (Comments)

Function

Binds together with S18 to 16S ribosomal RNA By similarity.

Sequence similarities

Belongs to the ribosomal protein S6P family.

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processtranslation

Inferred from electronic annotation. Source: HAMAP

   Cellular componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular functionrRNA binding

Inferred from electronic annotation. Source: HAMAP

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 12012030S ribosomal protein S6 HAMAP MF_00360
PRO_0000273735

Sequences

Sequence LengthMass (Da)Tools
Q1RKB1-1 [UniParc].

Last modified May 16, 2006. Version 1.
Checksum: B16482ABBAEF51E9

FASTA12013,744
        10         20         30         40         50         60 
MSFYESVFIV RQDVSLNDID KIVDDFSKII KDNNGAIVKK EYWGLRALAY KIGNHKKGHY 

        70         80         90        100        110        120 
YLLGLDTTPA VKQELERKMK LNENIIRFLT QKVDSISNEP SPILKNQSTE NTPVIDVTAN 

« Hide

References

[1]"Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
PLoS Genet. 2:733-744(2006) [PubMed: 16703114] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

CP000087 Genomic DNA. Translation: ABE04203.1.
RefSeqYP_537292.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGQ1RKB1.

Genome annotation databases

GeneID3995318.
GenomeReviewsGene locus RBE_0122 in contig CP000087_GR.
KEGGrbe:RBE_0122.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG747554.
OMAMSFYESV.

Enzyme and pathway databases

BioCycRBEL336407:RBE_0122-MON.

Family and domain databases

HAMAPMF_00360.
[Tree]
InterProIPR000529. Ribosomal_S6.
IPR020814. Ribosomal_S6_bac-like.
IPR014717. Transl_elong_EF1B/ribosomal_S6.
[Graphical view]
Gene3DG3DSA:3.30.70.60. Transl_elong_EF1B/rib_con. 1 hit.
PfamPF01250. Ribosomal_S6. 1 hit.
[Graphical view]
PROSITEPS01048. RIBOSOMAL_S6. False negative.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRS6_RICBR
AccessionPrimary (citable) accession number: Q1RKB1
Entry history
Integrated into UniProtKB/Swiss-Prot: January 23, 2007
Last sequence update: May 16, 2006
Last modified: December 15, 2009
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

Ribosomal proteins

Ribosomal proteins families and list of entries

Rickettsia bellii strain RML369-C

Rickettsia bellii (strain RML369-C): entries and gene names

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents