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Q1RK09

- RL13_RICBR

UniProt

Q1RK09 - RL13_RICBR

Protein

50S ribosomal protein L13

Gene

rplM

Organism
Rickettsia bellii (strain RML369-C)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 54 (01 Oct 2014)
      Sequence version 1 (16 May 2006)
      Previous versions | rss
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    Functioni

    This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.UniRule annotation

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Enzyme and pathway databases

    BioCyciRBEL336407:GJCY-230-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L13UniRule annotation
    Gene namesi
    Name:rplMUniRule annotation
    Ordered Locus Names:RBE_0224
    OrganismiRickettsia bellii (strain RML369-C)
    Taxonomic identifieri336407 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiabelli group
    ProteomesiUP000001951: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 15515550S ribosomal protein L13PRO_0000272380Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit.UniRule annotation

    Protein-protein interaction databases

    STRINGi336407.RBE_0224.

    Structurei

    3D structure databases

    ProteinModelPortaliQ1RK09.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L13P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0102.
    HOGENOMiHOG000225286.
    KOiK02871.
    OMAiHQEFLKM.
    OrthoDBiEOG628FBD.

    Family and domain databases

    Gene3Di3.90.1180.10. 1 hit.
    HAMAPiMF_01366. Ribosomal_L13.
    InterProiIPR005822. Ribosomal_L13.
    IPR005823. Ribosomal_L13_bac-type.
    IPR023563. Ribosomal_L13_CS.
    IPR023564. Ribosomal_L13_dom.
    [Graphical view]
    PANTHERiPTHR11545. PTHR11545. 1 hit.
    PfamiPF00572. Ribosomal_L13. 1 hit.
    [Graphical view]
    PIRSFiPIRSF002181. Ribosomal_L13. 1 hit.
    SUPFAMiSSF52161. SSF52161. 1 hit.
    TIGRFAMsiTIGR01066. rplM_bact. 1 hit.
    PROSITEiPS00783. RIBOSOMAL_L13. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q1RK09-1 [UniParc]FASTAAdd to Basket

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    MKTYSAKPSE IEKKWWVIDA KNVVLGRLAS RVANMLRGKH KPSFTPHMDC    50
    GDNIIIINAE HVTLTGKKAN PKDGKIYYRH TGFPGGIKDT TAGKILSGKH 100
    PERVIKMAVK RMITRNALGA KQMSNLYIYA NSEHPHAGQQ PVVYDFASQN 150
    PKNKK 155
    Length:155
    Mass (Da):17,338
    Last modified:May 16, 2006 - v1
    Checksum:i10ECCD391374C79F
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000087 Genomic DNA. Translation: ABE04305.1.
    RefSeqiWP_011476918.1. NC_007940.1.
    YP_537394.1. NC_007940.1.

    Genome annotation databases

    EnsemblBacteriaiABE04305; ABE04305; RBE_0224.
    GeneIDi3995286.
    KEGGirbe:RBE_0224.
    PATRICi17881755. VBIRicBel102610_0257.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000087 Genomic DNA. Translation: ABE04305.1 .
    RefSeqi WP_011476918.1. NC_007940.1.
    YP_537394.1. NC_007940.1.

    3D structure databases

    ProteinModelPortali Q1RK09.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 336407.RBE_0224.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABE04305 ; ABE04305 ; RBE_0224 .
    GeneIDi 3995286.
    KEGGi rbe:RBE_0224.
    PATRICi 17881755. VBIRicBel102610_0257.

    Phylogenomic databases

    eggNOGi COG0102.
    HOGENOMi HOG000225286.
    KOi K02871.
    OMAi HQEFLKM.
    OrthoDBi EOG628FBD.

    Enzyme and pathway databases

    BioCyci RBEL336407:GJCY-230-MONOMER.

    Family and domain databases

    Gene3Di 3.90.1180.10. 1 hit.
    HAMAPi MF_01366. Ribosomal_L13.
    InterProi IPR005822. Ribosomal_L13.
    IPR005823. Ribosomal_L13_bac-type.
    IPR023563. Ribosomal_L13_CS.
    IPR023564. Ribosomal_L13_dom.
    [Graphical view ]
    PANTHERi PTHR11545. PTHR11545. 1 hit.
    Pfami PF00572. Ribosomal_L13. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF002181. Ribosomal_L13. 1 hit.
    SUPFAMi SSF52161. SSF52161. 1 hit.
    TIGRFAMsi TIGR01066. rplM_bact. 1 hit.
    PROSITEi PS00783. RIBOSOMAL_L13. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
      Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
      PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: RML369-C.

    Entry informationi

    Entry nameiRL13_RICBR
    AccessioniPrimary (citable) accession number: Q1RK09
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 23, 2007
    Last sequence update: May 16, 2006
    Last modified: October 1, 2014
    This is version 54 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Ribosomal proteins
      Ribosomal proteins families and list of entries
    2. Rickettsia bellii strain RML369-C
      Rickettsia bellii (strain RML369-C): entries and gene names
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3