Q1RK09 (RL13_RICBR) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
50S ribosomal protein L13

Gene names

Name:	rplM
Ordered Locus Names:	RBE_0224

Organism

Rickettsia bellii (strain RML369-C) [Complete proteome] [HAMAP]

Taxonomic identifier

336407 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rickettsiales › Rickettsiaceae › Rickettsieae › Rickettsia

Protein attributes

Sequence length	155 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly By similarity. HAMAP MF_01366_B
Subunit structure	Part of the 50S ribosomal subunit By similarity. HAMAP MF_01366_B
Sequence similarities	Belongs to the ribosomal protein L13P family.

Ontologies

Keywords
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: InterPro
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 155	155	50S ribosomal protein L13 HAMAP MF_01366_B		PRO_0000272380

Sequences

	Sequence		Length	Mass (Da)
	Q1RK09 [UniParc]. Last modified May 16, 2006. Version 1. Checksum: 10ECCD391374C79F	FASTA	155	17,338
	10 20 30 40 50 60 MKTYSAKPSE IEKKWWVIDA KNVVLGRLAS RVANMLRGKH KPSFTPHMDC GDNIIIINAE 70 80 90 100 110 120 HVTLTGKKAN PKDGKIYYRH TGFPGGIKDT TAGKILSGKH PERVIKMAVK RMITRNALGA 130 140 150 KQMSNLYIYA NSEHPHAGQQ PVVYDFASQN PKNKK

References

[1]

"Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens." Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D. PLoS Genet. 2:733-744(2006) [PubMed: 16703114] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: RML369-C.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000087 Genomic DNA. Translation: ABE04305.1.
RefSeq	YP_537394.1. NC_007940.1.
3D structure databases
ProteinModelPortal	Q1RK09.
ModBase	Search...
Protein-protein interaction databases
STRING	Q1RK09.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3995286.
GenomeReviews	Gene locus RBE_0224 in contig CP000087_GR.
KEGG	rbe:RBE_0224.
PATRIC	17881755. VBIRicBel102610_0257.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0102.
HOGENOM	HBG380826.
OMA	YTPHMDC.
ProtClustDB	PRK09216.
Enzyme and pathway databases
BioCyc	RBEL336407:RBE_0224-MONOMER.
Family and domain databases
HAMAP	MF_01366_B. Ribosomal_L13_B. [Tree]
InterPro	IPR005822. Ribosomal_L13. IPR005823. Ribosomal_L13_bac-type. IPR023563. Ribosomal_L13_CS. IPR023564. Ribosomal_L13_dom. [Graphical view]
Gene3D	G3DSA:3.90.1180.10. Ribosomal_L13. 1 hit.
KO	K02871.
PANTHER	PTHR11545. Ribosomal_L13. 1 hit.
Pfam	PF00572. Ribosomal_L13. 1 hit. [Graphical view]
PIRSF	PIRSF002181. Ribosomal_L13. 1 hit.
SUPFAM	SSF52161. Ribosomal_L13. 1 hit.
TIGRFAMs	TIGR01066. RplM_bact. 1 hit.
PROSITE	PS00783. RIBOSOMAL_L13. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RL13_RICBR

Accession

Primary (citable) accession number: Q1RK09

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 23, 2007
Last sequence update:	May 16, 2006
Last modified:	January 25, 2012
This is version 39 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program