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Q1RJT5

- RF1_RICBR

UniProt

Q1RJT5 - RF1_RICBR

Protein

Peptide chain release factor 1

Gene

prfA

Organism
Rickettsia bellii (strain RML369-C)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 55 (01 Oct 2014)
      Sequence version 1 (16 May 2006)
      Previous versions | rss
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    Functioni

    Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.UniRule annotation

    GO - Molecular functioni

    1. translation release factor activity, codon specific Source: UniProtKB-HAMAP

    Keywords - Biological processi

    Protein biosynthesis

    Enzyme and pathway databases

    BioCyciRBEL336407:GJCY-304-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Peptide chain release factor 1UniRule annotation
    Short name:
    RF-1UniRule annotation
    Gene namesi
    Name:prfAUniRule annotation
    Ordered Locus Names:RBE_0298
    OrganismiRickettsia bellii (strain RML369-C)
    Taxonomic identifieri336407 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiabelli group
    ProteomesiUP000001951: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 357357Peptide chain release factor 1PRO_0000263339Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei236 – 2361N5-methylglutamineUniRule annotation

    Post-translational modificationi

    Methylated by PrmC. Methylation increases the termination efficiency of RF1.UniRule annotation

    Keywords - PTMi

    Methylation

    Interactioni

    Protein-protein interaction databases

    STRINGi336407.RBE_0298.

    Structurei

    3D structure databases

    ProteinModelPortaliQ1RJT5.
    SMRiQ1RJT5. Positions 104-355.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the prokaryotic/mitochondrial release factor family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0216.
    HOGENOMiHOG000074815.
    KOiK02835.
    OMAiYGQLKFE.
    OrthoDBiEOG6TN48J.

    Family and domain databases

    Gene3Di3.30.160.20. 1 hit.
    HAMAPiMF_00093. Rel_fac_1.
    InterProiIPR014720. dsRNA-bd_dom.
    IPR005139. PCRF.
    IPR000352. Pep_chain_release_fac_I_II.
    IPR004373. PrfA.
    [Graphical view]
    PfamiPF03462. PCRF. 1 hit.
    PF00472. RF-1. 1 hit.
    [Graphical view]
    SMARTiSM00937. PCRF. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR00019. prfA. 1 hit.
    PROSITEiPS00745. RF_PROK_I. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q1RJT5-1 [UniParc]FASTAAdd to Basket

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    MNISSFSDNL TKILGKYEDL SEKLSSGIGG EEFVKASKEY ADLEDIVQKI    50
    KEYNKAKAEL EEANNFKQEP SLDKATLEMI EEEIRNLEDS LPTLERSVKI 100
    ALLPKDEADS KSAIIEIRAG TGGEEAALFA AKLFNMYQRY AELKGWRFEI 150
    LSIDETGIGG YKEVSASIKG KDVFSKLKFE SGVHRVQRVP ETESQGRIHT 200
    SAATVAVLPE VEDVDIKLEE KDLRIDTYRA SGAGGQHVNT TDSAVRITHI 250
    PTGITVALQD EKSQHKNKAK ALKILRARIY EEERRKKDQE RANNRRKQIG 300
    SGDRSERIRT YNFPQGRVSD HRINLTLYKI DEVINGQLDE FIEALIANDE 350
    AKKLSDI 357
    Length:357
    Mass (Da):40,217
    Last modified:May 16, 2006 - v1
    Checksum:i530AAD165D1027C8
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000087 Genomic DNA. Translation: ABE04379.1.
    RefSeqiWP_011476990.1. NC_007940.1.
    YP_537468.1. NC_007940.1.

    Genome annotation databases

    EnsemblBacteriaiABE04379; ABE04379; RBE_0298.
    GeneIDi3996208.
    KEGGirbe:RBE_0298.
    PATRICi17881911. VBIRicBel102610_0335.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000087 Genomic DNA. Translation: ABE04379.1 .
    RefSeqi WP_011476990.1. NC_007940.1.
    YP_537468.1. NC_007940.1.

    3D structure databases

    ProteinModelPortali Q1RJT5.
    SMRi Q1RJT5. Positions 104-355.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 336407.RBE_0298.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABE04379 ; ABE04379 ; RBE_0298 .
    GeneIDi 3996208.
    KEGGi rbe:RBE_0298.
    PATRICi 17881911. VBIRicBel102610_0335.

    Phylogenomic databases

    eggNOGi COG0216.
    HOGENOMi HOG000074815.
    KOi K02835.
    OMAi YGQLKFE.
    OrthoDBi EOG6TN48J.

    Enzyme and pathway databases

    BioCyci RBEL336407:GJCY-304-MONOMER.

    Family and domain databases

    Gene3Di 3.30.160.20. 1 hit.
    HAMAPi MF_00093. Rel_fac_1.
    InterProi IPR014720. dsRNA-bd_dom.
    IPR005139. PCRF.
    IPR000352. Pep_chain_release_fac_I_II.
    IPR004373. PrfA.
    [Graphical view ]
    Pfami PF03462. PCRF. 1 hit.
    PF00472. RF-1. 1 hit.
    [Graphical view ]
    SMARTi SM00937. PCRF. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR00019. prfA. 1 hit.
    PROSITEi PS00745. RF_PROK_I. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
      Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
      PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: RML369-C.

    Entry informationi

    Entry nameiRF1_RICBR
    AccessioniPrimary (citable) accession number: Q1RJT5
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: December 12, 2006
    Last sequence update: May 16, 2006
    Last modified: October 1, 2014
    This is version 55 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Rickettsia bellii strain RML369-C
      Rickettsia bellii (strain RML369-C): entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3