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Q1RJR7

- RADA_RICBR

UniProt

Q1RJR7 - RADA_RICBR

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Protein

DNA repair protein RadA homolog

Gene

radA

Organism
Rickettsia bellii (strain RML369-C)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

May play a role in the repair of endogenous alkylation damage.By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri10 – 2718C4-typeSequence AnalysisAdd
BLAST
Nucleotide bindingi91 – 988ATPSequence Analysis

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. damaged DNA binding Source: InterPro
  3. DNA-dependent ATPase activity Source: InterPro
  4. metal ion binding Source: UniProtKB-KW

GO - Biological processi

  1. DNA repair Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

DNA damage, DNA repair

Keywords - Ligandi

ATP-binding, DNA-binding, Metal-binding, Nucleotide-binding, Zinc

Enzyme and pathway databases

BioCyciRBEL336407:GJCY-322-MONOMER.

Protein family/group databases

MEROPSiS16.A04.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA repair protein RadA homolog
Alternative name(s):
DNA repair protein Sms homolog
Gene namesi
Name:radA
Ordered Locus Names:RBE_0316
OrganismiRickettsia bellii (strain RML369-C)
Taxonomic identifieri336407 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiabelli group
ProteomesiUP000001951: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 448448DNA repair protein RadA homologPRO_0000286659Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi336407.RBE_0316.

Structurei

3D structure databases

ProteinModelPortaliQ1RJR7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the RecA family. RadA subfamily.Curated

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri10 – 2718C4-typeSequence AnalysisAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiCOG1066.
HOGENOMiHOG000218329.
KOiK04485.
OMAiVLEHAID.
OrthoDBiEOG6DRPHC.

Family and domain databases

Gene3Di3.30.230.10. 1 hit.
3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR004504. DNA_repair_RadA.
IPR027417. P-loop_NTPase.
IPR020588. RecA_ATP-bd.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
[Graphical view]
PRINTSiPR01874. DNAREPAIRADA.
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
SSF54211. SSF54211. 2 hits.
TIGRFAMsiTIGR00416. sms. 1 hit.
PROSITEiPS50162. RECA_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q1RJR7 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTKEKKHYIC SNCGNTSPKW SGQCFDCGVW GSIIEEKVIS NKNIAKIGSK
60 70 80 90 100
QDFEQLSSNV TDQVRISTPI GELDRVLGGG LVLGSAILIG GDPGIGKSTL
110 120 130 140 150
LLQLVAGSFA SKVKCLYITG EESLDQIKLR ALRLDLVNDK TNILAANNLE
160 170 180 190 200
DIIASLEANK GNIDLVVIDS IQTIATRELT SPPGTVSQIR TCAHELVNYA
210 220 230 240 250
KQNNIIILLS CHVTKDGQLA GPKLLEHLVD TVLYFEGDHN NHFRILRSYK
260 270 280 290 300
NRFGGVGEIG VFEMSSSGLI EVTNPSELFL MKREQNVIGT AIFAGIEGSR
310 320 330 340 350
PLLMEVQALI VPSNMVTPRR SAVGWDVNRL SMILAVLSSR IGLNLANYEV
360 370 380 390 400
YLSIAGGLKI NEPASDLAVA ASLISAATNK PLPEHSVFFG EISLSGEIRK
410 420 430 440
TAKAEARIKE ALKLGFNNII CSKSENLTHD FISSIAHLKD LKLLLGSS
Length:448
Mass (Da):48,450
Last modified:May 16, 2006 - v1
Checksum:iD4F2DDDF1E82C3B8
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000087 Genomic DNA. Translation: ABE04397.1.
RefSeqiYP_537486.1. NC_007940.1.

Genome annotation databases

EnsemblBacteriaiABE04397; ABE04397; RBE_0316.
GeneIDi3996290.
KEGGirbe:RBE_0316.
PATRICi17881953. VBIRicBel102610_0356.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000087 Genomic DNA. Translation: ABE04397.1 .
RefSeqi YP_537486.1. NC_007940.1.

3D structure databases

ProteinModelPortali Q1RJR7.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 336407.RBE_0316.

Protein family/group databases

MEROPSi S16.A04.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABE04397 ; ABE04397 ; RBE_0316 .
GeneIDi 3996290.
KEGGi rbe:RBE_0316.
PATRICi 17881953. VBIRicBel102610_0356.

Phylogenomic databases

eggNOGi COG1066.
HOGENOMi HOG000218329.
KOi K04485.
OMAi VLEHAID.
OrthoDBi EOG6DRPHC.

Enzyme and pathway databases

BioCyci RBEL336407:GJCY-322-MONOMER.

Family and domain databases

Gene3Di 3.30.230.10. 1 hit.
3.40.50.300. 1 hit.
InterProi IPR003593. AAA+_ATPase.
IPR004504. DNA_repair_RadA.
IPR027417. P-loop_NTPase.
IPR020588. RecA_ATP-bd.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
[Graphical view ]
PRINTSi PR01874. DNAREPAIRADA.
SMARTi SM00382. AAA. 1 hit.
[Graphical view ]
SUPFAMi SSF52540. SSF52540. 1 hit.
SSF54211. SSF54211. 2 hits.
TIGRFAMsi TIGR00416. sms. 1 hit.
PROSITEi PS50162. RECA_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
    Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
    PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RML369-C.

Entry informationi

Entry nameiRADA_RICBR
AccessioniPrimary (citable) accession number: Q1RJR7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 15, 2007
Last sequence update: May 16, 2006
Last modified: October 29, 2014
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Rickettsia bellii strain RML369-C
    Rickettsia bellii (strain RML369-C): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3