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Q1RJR7

- RADA_RICBR

UniProt

Q1RJR7 - RADA_RICBR

Protein

DNA repair protein RadA homolog

Gene

radA

Organism
Rickettsia bellii (strain RML369-C)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 56 (01 Oct 2014)
      Sequence version 1 (16 May 2006)
      Previous versions | rss
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    Functioni

    May play a role in the repair of endogenous alkylation damage.By similarity

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Zinc fingeri10 – 2718C4-typeSequence AnalysisAdd
    BLAST
    Nucleotide bindingi91 – 988ATPSequence Analysis

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. damaged DNA binding Source: InterPro
    3. DNA-dependent ATPase activity Source: InterPro
    4. metal ion binding Source: UniProtKB-KW

    GO - Biological processi

    1. DNA repair Source: UniProtKB-KW

    Keywords - Biological processi

    DNA damage, DNA repair

    Keywords - Ligandi

    ATP-binding, DNA-binding, Metal-binding, Nucleotide-binding, Zinc

    Enzyme and pathway databases

    BioCyciRBEL336407:GJCY-322-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA repair protein RadA homolog
    Alternative name(s):
    DNA repair protein Sms homolog
    Gene namesi
    Name:radA
    Ordered Locus Names:RBE_0316
    OrganismiRickettsia bellii (strain RML369-C)
    Taxonomic identifieri336407 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiabelli group
    ProteomesiUP000001951: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 448448DNA repair protein RadA homologPRO_0000286659Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi336407.RBE_0316.

    Structurei

    3D structure databases

    ProteinModelPortaliQ1RJR7.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the RecA family. RadA subfamily.Curated

    Zinc finger

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Zinc fingeri10 – 2718C4-typeSequence AnalysisAdd
    BLAST

    Keywords - Domaini

    Zinc-finger

    Phylogenomic databases

    eggNOGiCOG1066.
    HOGENOMiHOG000218329.
    KOiK04485.
    OMAiVLEHAID.
    OrthoDBiEOG6DRPHC.

    Family and domain databases

    Gene3Di3.30.230.10. 1 hit.
    3.40.50.300. 1 hit.
    InterProiIPR003593. AAA+_ATPase.
    IPR004504. DNA_repair_RadA.
    IPR027417. P-loop_NTPase.
    IPR020588. RecA_ATP-bd.
    IPR020568. Ribosomal_S5_D2-typ_fold.
    IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
    [Graphical view]
    PRINTSiPR01874. DNAREPAIRADA.
    SMARTiSM00382. AAA. 1 hit.
    [Graphical view]
    SUPFAMiSSF52540. SSF52540. 1 hit.
    SSF54211. SSF54211. 2 hits.
    TIGRFAMsiTIGR00416. sms. 1 hit.
    PROSITEiPS50162. RECA_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q1RJR7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTKEKKHYIC SNCGNTSPKW SGQCFDCGVW GSIIEEKVIS NKNIAKIGSK    50
    QDFEQLSSNV TDQVRISTPI GELDRVLGGG LVLGSAILIG GDPGIGKSTL 100
    LLQLVAGSFA SKVKCLYITG EESLDQIKLR ALRLDLVNDK TNILAANNLE 150
    DIIASLEANK GNIDLVVIDS IQTIATRELT SPPGTVSQIR TCAHELVNYA 200
    KQNNIIILLS CHVTKDGQLA GPKLLEHLVD TVLYFEGDHN NHFRILRSYK 250
    NRFGGVGEIG VFEMSSSGLI EVTNPSELFL MKREQNVIGT AIFAGIEGSR 300
    PLLMEVQALI VPSNMVTPRR SAVGWDVNRL SMILAVLSSR IGLNLANYEV 350
    YLSIAGGLKI NEPASDLAVA ASLISAATNK PLPEHSVFFG EISLSGEIRK 400
    TAKAEARIKE ALKLGFNNII CSKSENLTHD FISSIAHLKD LKLLLGSS 448
    Length:448
    Mass (Da):48,450
    Last modified:May 16, 2006 - v1
    Checksum:iD4F2DDDF1E82C3B8
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000087 Genomic DNA. Translation: ABE04397.1.
    RefSeqiYP_537486.1. NC_007940.1.

    Genome annotation databases

    EnsemblBacteriaiABE04397; ABE04397; RBE_0316.
    GeneIDi3996290.
    KEGGirbe:RBE_0316.
    PATRICi17881953. VBIRicBel102610_0356.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000087 Genomic DNA. Translation: ABE04397.1 .
    RefSeqi YP_537486.1. NC_007940.1.

    3D structure databases

    ProteinModelPortali Q1RJR7.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 336407.RBE_0316.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABE04397 ; ABE04397 ; RBE_0316 .
    GeneIDi 3996290.
    KEGGi rbe:RBE_0316.
    PATRICi 17881953. VBIRicBel102610_0356.

    Phylogenomic databases

    eggNOGi COG1066.
    HOGENOMi HOG000218329.
    KOi K04485.
    OMAi VLEHAID.
    OrthoDBi EOG6DRPHC.

    Enzyme and pathway databases

    BioCyci RBEL336407:GJCY-322-MONOMER.

    Family and domain databases

    Gene3Di 3.30.230.10. 1 hit.
    3.40.50.300. 1 hit.
    InterProi IPR003593. AAA+_ATPase.
    IPR004504. DNA_repair_RadA.
    IPR027417. P-loop_NTPase.
    IPR020588. RecA_ATP-bd.
    IPR020568. Ribosomal_S5_D2-typ_fold.
    IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
    [Graphical view ]
    PRINTSi PR01874. DNAREPAIRADA.
    SMARTi SM00382. AAA. 1 hit.
    [Graphical view ]
    SUPFAMi SSF52540. SSF52540. 1 hit.
    SSF54211. SSF54211. 2 hits.
    TIGRFAMsi TIGR00416. sms. 1 hit.
    PROSITEi PS50162. RECA_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
      Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
      PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: RML369-C.

    Entry informationi

    Entry nameiRADA_RICBR
    AccessioniPrimary (citable) accession number: Q1RJR7
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 15, 2007
    Last sequence update: May 16, 2006
    Last modified: October 1, 2014
    This is version 56 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Rickettsia bellii strain RML369-C
      Rickettsia bellii (strain RML369-C): entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3