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Q1RIG5

- RIMM_RICBR

UniProt

Q1RIG5 - RIMM_RICBR

Protein

Ribosome maturation factor RimM

Gene

rimM

Organism
Rickettsia bellii (strain RML369-C)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 46 (01 Oct 2014)
      Sequence version 1 (16 May 2006)
      Previous versions | rss
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    Functioni

    An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes.UniRule annotation

    GO - Molecular functioni

    1. ribosome binding Source: InterPro

    GO - Biological processi

    1. ribosomal small subunit biogenesis Source: UniProtKB-HAMAP
    2. rRNA processing Source: InterPro

    Keywords - Molecular functioni

    Chaperone

    Keywords - Biological processi

    Ribosome biogenesis

    Enzyme and pathway databases

    BioCyciRBEL336407:GJCY-789-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Ribosome maturation factor RimMUniRule annotation
    Gene namesi
    Name:rimMUniRule annotation
    Ordered Locus Names:RBE_0768
    OrganismiRickettsia bellii (strain RML369-C)
    Taxonomic identifieri336407 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiabelli group
    ProteomesiUP000001951: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. ribosome Source: InterPro

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 166166Ribosome maturation factor RimMPRO_0000244161Add
    BLAST

    Interactioni

    Subunit structurei

    Binds ribosomal protein S19.UniRule annotation

    Protein-protein interaction databases

    STRINGi336407.RBE_0768.

    Structurei

    3D structure databases

    ProteinModelPortaliQ1RIG5.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini94 – 16673PRC barrelUniRule annotationAdd
    BLAST

    Domaini

    The PRC barrel domain binds ribosomal protein S19.UniRule annotation

    Sequence similaritiesi

    Belongs to the RimM family.UniRule annotation
    Contains 1 PRC barrel domain.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0806.
    HOGENOMiHOG000220989.
    KOiK02860.
    OMAiTIVAVPN.
    OrthoDBiEOG6SBT2K.

    Family and domain databases

    Gene3Di2.40.30.60. 1 hit.
    HAMAPiMF_00014. Ribosome_mat_RimM.
    InterProiIPR011961. 16S_RimM.
    IPR027275. PRC-brl_dom.
    IPR011033. PRC_barrel-like.
    IPR002676. RimM.
    IPR009000. Transl_B-barrel.
    [Graphical view]
    PfamiPF05239. PRC. 1 hit.
    PF01782. RimM. 1 hit.
    [Graphical view]
    SUPFAMiSSF50346. SSF50346. 1 hit.
    SSF50447. SSF50447. 1 hit.
    TIGRFAMsiTIGR02273. 16S_RimM. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q1RIG5-1 [UniParc]FASTAAdd to Basket

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    MDSLENLILV GVIKSCHGIK GHIILRSFTD PTVKITEREL VNESGEKVNI    50
    NLIKQNSKGE LICQFNDIST RNEAANLKGY KLFCLRSSLP KLEEDEFYIT 100
    DLNNLPILDN NHTEIGKIKN ILNFGAGDII EVEFLDKTTE LLPFNKDFFP 150
    IITKDYAILN YKRDEL 166
    Length:166
    Mass (Da):18,960
    Last modified:May 16, 2006 - v1
    Checksum:i279867B0945A385B
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000087 Genomic DNA. Translation: ABE04849.1.
    RefSeqiYP_537938.1. NC_007940.1.

    Genome annotation databases

    EnsemblBacteriaiABE04849; ABE04849; RBE_0768.
    GeneIDi3995482.
    KEGGirbe:RBE_0768.
    PATRICi17883025. VBIRicBel102610_0877.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000087 Genomic DNA. Translation: ABE04849.1 .
    RefSeqi YP_537938.1. NC_007940.1.

    3D structure databases

    ProteinModelPortali Q1RIG5.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 336407.RBE_0768.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABE04849 ; ABE04849 ; RBE_0768 .
    GeneIDi 3995482.
    KEGGi rbe:RBE_0768.
    PATRICi 17883025. VBIRicBel102610_0877.

    Phylogenomic databases

    eggNOGi COG0806.
    HOGENOMi HOG000220989.
    KOi K02860.
    OMAi TIVAVPN.
    OrthoDBi EOG6SBT2K.

    Enzyme and pathway databases

    BioCyci RBEL336407:GJCY-789-MONOMER.

    Family and domain databases

    Gene3Di 2.40.30.60. 1 hit.
    HAMAPi MF_00014. Ribosome_mat_RimM.
    InterProi IPR011961. 16S_RimM.
    IPR027275. PRC-brl_dom.
    IPR011033. PRC_barrel-like.
    IPR002676. RimM.
    IPR009000. Transl_B-barrel.
    [Graphical view ]
    Pfami PF05239. PRC. 1 hit.
    PF01782. RimM. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50346. SSF50346. 1 hit.
    SSF50447. SSF50447. 1 hit.
    TIGRFAMsi TIGR02273. 16S_RimM. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
      Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
      PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: RML369-C.

    Entry informationi

    Entry nameiRIMM_RICBR
    AccessioniPrimary (citable) accession number: Q1RIG5
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: June 27, 2006
    Last sequence update: May 16, 2006
    Last modified: October 1, 2014
    This is version 46 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Rickettsia bellii strain RML369-C
      Rickettsia bellii (strain RML369-C): entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3