Q1RIG5 (RIMM_RICBR) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Ribosome maturation factor RimM

Gene names

Name:	rimM
Ordered Locus Names:	RBE_0768

Organism

Rickettsia bellii (strain RML369-C) [Complete proteome] [HAMAP]

Taxonomic identifier

336407 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rickettsiales › Rickettsiaceae › Rickettsieae › Rickettsia › belli group › Rickettsia bellii

Protein attributes

Sequence length	166 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes By similarity. HAMAP-Rule MF_00014
Subunit structure	Binds ribosomal protein S19 By similarity. HAMAP-Rule MF_00014
Subcellular location	Cytoplasm By similarity HAMAP-Rule MF_00014.
Domain	The PRC barrel domain binds ribosomal protein S19 By similarity. HAMAP-Rule MF_00014
Sequence similarities	Belongs to the RimM family. Contains 1 PRC barrel domain.

Ontologies

Keywords
Biological process	Ribosome biogenesis
Cellular component	Cytoplasm
Molecular function	Chaperone
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	rRNA processing Inferred from electronic annotation. Source: InterPro ribosomal small subunit biogenesis Inferred from electronic annotation. Source: HAMAP
Cellular_component	ribosome Inferred from electronic annotation. Source: InterPro
Molecular_function	ribosome binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 166	166	Ribosome maturation factor RimM HAMAP-Rule MF_00014		PRO_0000244161
Regions
	Domain	94 – 166	73	PRC barrel

Sequences

	Sequence		Length	Mass (Da)
	Q1RIG5 [UniParc]. Last modified May 16, 2006. Version 1. Checksum: 279867B0945A385B	FASTA	166	18,960
	10 20 30 40 50 60 MDSLENLILV GVIKSCHGIK GHIILRSFTD PTVKITEREL VNESGEKVNI NLIKQNSKGE 70 80 90 100 110 120 LICQFNDIST RNEAANLKGY KLFCLRSSLP KLEEDEFYIT DLNNLPILDN NHTEIGKIKN 130 140 150 160 ILNFGAGDII EVEFLDKTTE LLPFNKDFFP IITKDYAILN YKRDEL

References

[1]

"Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens." Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D. PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: RML369-C.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000087 Genomic DNA. Translation: ABE04849.1.
RefSeq	YP_537938.1. NC_007940.1.
3D structure databases
ProteinModelPortal	Q1RIG5.
ModBase	Search...
Protein-protein interaction databases
STRING	336407.RBE_0768.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABE04849; ABE04849; RBE_0768.
GeneID	3995482.
KEGG	rbe:RBE_0768.
PATRIC	17883025. VBIRicBel102610_0877.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0806.
HOGENOM	HOG000220989.
KO	K02860.
OMA	DEFYHAD.
ProtClustDB	PRK00122.
Enzyme and pathway databases
BioCyc	RBEL336407:GJCY-789-MONOMER.
Family and domain databases
Gene3D	2.40.30.60. 1 hit.
HAMAP	MF_00014. Ribosome_mat_RimM.
InterPro	IPR011961. 16S_RimM. IPR027275. PRC-brl_dom. IPR011033. PRC_barrel-like. IPR002676. RimM. IPR009000. Transl_elong_init/rib_B-barrel. [Graphical view]
Pfam	PF05239. PRC. 1 hit. PF01782. RimM. 1 hit. [Graphical view]
SUPFAM	SSF50346. PRCH_cytoplasmic. 1 hit. SSF50447. Translat_factor. 1 hit.
TIGRFAMs	TIGR02273. 16S_RimM. 1 hit.
ProtoNet	Search...

Entry information

Entry name

RIMM_RICBR

Accession

Primary (citable) accession number: Q1RIG5

Entry history

Integrated into UniProtKB/Swiss-Prot:	June 27, 2006
Last sequence update:	May 16, 2006
Last modified:	May 1, 2013
This is version 41 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program