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Q1RIG5 (RIMM_RICBR) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 45. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Ribosome maturation factor RimM
Gene names
Name:rimM
Ordered Locus Names:RBE_0768
OrganismRickettsia bellii (strain RML369-C) [Complete proteome] [HAMAP]
Taxonomic identifier336407 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiabelli group

Protein attributes

Sequence length166 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes By similarity. HAMAP-Rule MF_00014

Subunit structure

Binds ribosomal protein S19 By similarity. HAMAP-Rule MF_00014

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00014.

Domain

The PRC barrel domain binds ribosomal protein S19 By similarity. HAMAP-Rule MF_00014

Sequence similarities

Belongs to the RimM family.

Contains 1 PRC barrel domain.

Ontologies

Keywords
   Biological processRibosome biogenesis
   Cellular componentCytoplasm
   Molecular functionChaperone
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processrRNA processing

Inferred from electronic annotation. Source: InterPro

ribosomal small subunit biogenesis

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: InterPro

   Molecular_functionribosome binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 166166Ribosome maturation factor RimM HAMAP-Rule MF_00014
PRO_0000244161

Regions

Domain94 – 16673PRC barrel

Sequences

Sequence LengthMass (Da)Tools
Q1RIG5 [UniParc].

Last modified May 16, 2006. Version 1.
Checksum: 279867B0945A385B

FASTA16618,960
        10         20         30         40         50         60 
MDSLENLILV GVIKSCHGIK GHIILRSFTD PTVKITEREL VNESGEKVNI NLIKQNSKGE 

        70         80         90        100        110        120 
LICQFNDIST RNEAANLKGY KLFCLRSSLP KLEEDEFYIT DLNNLPILDN NHTEIGKIKN 

       130        140        150        160 
ILNFGAGDII EVEFLDKTTE LLPFNKDFFP IITKDYAILN YKRDEL 

« Hide

References

[1]"Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: RML369-C.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000087 Genomic DNA. Translation: ABE04849.1.
RefSeqYP_537938.1. NC_007940.1.

3D structure databases

ProteinModelPortalQ1RIG5.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING336407.RBE_0768.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABE04849; ABE04849; RBE_0768.
GeneID3995482.
KEGGrbe:RBE_0768.
PATRIC17883025. VBIRicBel102610_0877.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0806.
HOGENOMHOG000220989.
KOK02860.
OMATIVAVPN.
OrthoDBEOG6SBT2K.

Enzyme and pathway databases

BioCycRBEL336407:GJCY-789-MONOMER.

Family and domain databases

Gene3D2.40.30.60. 1 hit.
HAMAPMF_00014. Ribosome_mat_RimM.
InterProIPR011961. 16S_RimM.
IPR027275. PRC-brl_dom.
IPR011033. PRC_barrel-like.
IPR002676. RimM.
IPR009000. Transl_B-barrel.
[Graphical view]
PfamPF05239. PRC. 1 hit.
PF01782. RimM. 1 hit.
[Graphical view]
SUPFAMSSF50346. SSF50346. 1 hit.
SSF50447. SSF50447. 1 hit.
TIGRFAMsTIGR02273. 16S_RimM. 1 hit.
ProtoNetSearch...

Entry information

Entry nameRIMM_RICBR
AccessionPrimary (citable) accession number: Q1RIG5
Entry history
Integrated into UniProtKB/Swiss-Prot: June 27, 2006
Last sequence update: May 16, 2006
Last modified: May 14, 2014
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rickettsia bellii strain RML369-C

Rickettsia bellii (strain RML369-C): entries and gene names