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Protein

Ribosome maturation factor RimM

Gene

rimM

Organism
Rickettsia bellii (strain RML369-C)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Chaperone

Keywords - Biological processi

Ribosome biogenesis

Enzyme and pathway databases

BioCyciRBEL336407:GJCY-789-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosome maturation factor RimMUniRule annotation
Gene namesi
Name:rimMUniRule annotation
Ordered Locus Names:RBE_0768
OrganismiRickettsia bellii (strain RML369-C)
Taxonomic identifieri336407 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiabelli group
ProteomesiUP000001951 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 166166Ribosome maturation factor RimMPRO_0000244161Add
BLAST

Interactioni

Subunit structurei

Binds ribosomal protein S19.UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliQ1RIG5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini94 – 16673PRC barrelUniRule annotationAdd
BLAST

Domaini

The PRC barrel domain binds ribosomal protein S19.UniRule annotation

Sequence similaritiesi

Belongs to the RimM family.UniRule annotation
Contains 1 PRC barrel domain.UniRule annotation

Phylogenomic databases

eggNOGiCOG0806.
HOGENOMiHOG000220989.
KOiK02860.
OMAiYKLFCLR.
OrthoDBiEOG6SBT2K.

Family and domain databases

Gene3Di2.40.30.60. 1 hit.
HAMAPiMF_00014. Ribosome_mat_RimM.
InterProiIPR011961. 16S_RimM.
IPR027275. PRC-brl_dom.
IPR011033. PRC_barrel-like.
IPR002676. RimM.
IPR009000. Transl_B-barrel.
[Graphical view]
PfamiPF05239. PRC. 1 hit.
PF01782. RimM. 1 hit.
[Graphical view]
SUPFAMiSSF50346. SSF50346. 1 hit.
SSF50447. SSF50447. 1 hit.
TIGRFAMsiTIGR02273. 16S_RimM. 1 hit.

Sequencei

Sequence statusi: Complete.

Q1RIG5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDSLENLILV GVIKSCHGIK GHIILRSFTD PTVKITEREL VNESGEKVNI
60 70 80 90 100
NLIKQNSKGE LICQFNDIST RNEAANLKGY KLFCLRSSLP KLEEDEFYIT
110 120 130 140 150
DLNNLPILDN NHTEIGKIKN ILNFGAGDII EVEFLDKTTE LLPFNKDFFP
160
IITKDYAILN YKRDEL
Length:166
Mass (Da):18,960
Last modified:May 16, 2006 - v1
Checksum:i279867B0945A385B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000087 Genomic DNA. Translation: ABE04849.1.
RefSeqiWP_011477436.1. NC_007940.1.
YP_537938.1. NC_007940.1.

Genome annotation databases

EnsemblBacteriaiABE04849; ABE04849; RBE_0768.
KEGGirbe:RBE_0768.
PATRICi17883025. VBIRicBel102610_0877.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000087 Genomic DNA. Translation: ABE04849.1.
RefSeqiWP_011477436.1. NC_007940.1.
YP_537938.1. NC_007940.1.

3D structure databases

ProteinModelPortaliQ1RIG5.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABE04849; ABE04849; RBE_0768.
KEGGirbe:RBE_0768.
PATRICi17883025. VBIRicBel102610_0877.

Phylogenomic databases

eggNOGiCOG0806.
HOGENOMiHOG000220989.
KOiK02860.
OMAiYKLFCLR.
OrthoDBiEOG6SBT2K.

Enzyme and pathway databases

BioCyciRBEL336407:GJCY-789-MONOMER.

Family and domain databases

Gene3Di2.40.30.60. 1 hit.
HAMAPiMF_00014. Ribosome_mat_RimM.
InterProiIPR011961. 16S_RimM.
IPR027275. PRC-brl_dom.
IPR011033. PRC_barrel-like.
IPR002676. RimM.
IPR009000. Transl_B-barrel.
[Graphical view]
PfamiPF05239. PRC. 1 hit.
PF01782. RimM. 1 hit.
[Graphical view]
SUPFAMiSSF50346. SSF50346. 1 hit.
SSF50447. SSF50447. 1 hit.
TIGRFAMsiTIGR02273. 16S_RimM. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
    Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
    PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RML369-C.

Entry informationi

Entry nameiRIMM_RICBR
AccessioniPrimary (citable) accession number: Q1RIG5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 27, 2006
Last sequence update: May 16, 2006
Last modified: June 24, 2015
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Rickettsia bellii strain RML369-C
    Rickettsia bellii (strain RML369-C): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.