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Q1RIG5

- RIMM_RICBR

UniProt

Q1RIG5 - RIMM_RICBR

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Protein

Ribosome maturation factor RimM

Gene

rimM

Organism
Rickettsia bellii (strain RML369-C)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes.UniRule annotation

GO - Molecular functioni

  1. ribosome binding Source: InterPro

GO - Biological processi

  1. ribosomal small subunit biogenesis Source: UniProtKB-HAMAP
  2. rRNA processing Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Chaperone

Keywords - Biological processi

Ribosome biogenesis

Enzyme and pathway databases

BioCyciRBEL336407:GJCY-789-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosome maturation factor RimMUniRule annotation
Gene namesi
Name:rimMUniRule annotation
Ordered Locus Names:RBE_0768
OrganismiRickettsia bellii (strain RML369-C)
Taxonomic identifieri336407 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiabelli group
ProteomesiUP000001951: Chromosome

Subcellular locationi

Cytoplasm UniRule annotation

GO - Cellular componenti

  1. ribosome Source: InterPro
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 166166Ribosome maturation factor RimMPRO_0000244161Add
BLAST

Interactioni

Subunit structurei

Binds ribosomal protein S19.UniRule annotation

Protein-protein interaction databases

STRINGi336407.RBE_0768.

Structurei

3D structure databases

ProteinModelPortaliQ1RIG5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini94 – 16673PRC barrelUniRule annotationAdd
BLAST

Domaini

The PRC barrel domain binds ribosomal protein S19.UniRule annotation

Sequence similaritiesi

Belongs to the RimM family.UniRule annotation
Contains 1 PRC barrel domain.UniRule annotation

Phylogenomic databases

eggNOGiCOG0806.
HOGENOMiHOG000220989.
KOiK02860.
OMAiTIVAVPN.
OrthoDBiEOG6SBT2K.

Family and domain databases

Gene3Di2.40.30.60. 1 hit.
HAMAPiMF_00014. Ribosome_mat_RimM.
InterProiIPR011961. 16S_RimM.
IPR027275. PRC-brl_dom.
IPR011033. PRC_barrel-like.
IPR002676. RimM.
IPR009000. Transl_B-barrel.
[Graphical view]
PfamiPF05239. PRC. 1 hit.
PF01782. RimM. 1 hit.
[Graphical view]
SUPFAMiSSF50346. SSF50346. 1 hit.
SSF50447. SSF50447. 1 hit.
TIGRFAMsiTIGR02273. 16S_RimM. 1 hit.

Sequencei

Sequence statusi: Complete.

Q1RIG5-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MDSLENLILV GVIKSCHGIK GHIILRSFTD PTVKITEREL VNESGEKVNI
60 70 80 90 100
NLIKQNSKGE LICQFNDIST RNEAANLKGY KLFCLRSSLP KLEEDEFYIT
110 120 130 140 150
DLNNLPILDN NHTEIGKIKN ILNFGAGDII EVEFLDKTTE LLPFNKDFFP
160
IITKDYAILN YKRDEL
Length:166
Mass (Da):18,960
Last modified:May 16, 2006 - v1
Checksum:i279867B0945A385B
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000087 Genomic DNA. Translation: ABE04849.1.
RefSeqiWP_011477436.1. NC_007940.1.
YP_537938.1. NC_007940.1.

Genome annotation databases

EnsemblBacteriaiABE04849; ABE04849; RBE_0768.
GeneIDi3995482.
KEGGirbe:RBE_0768.
PATRICi17883025. VBIRicBel102610_0877.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000087 Genomic DNA. Translation: ABE04849.1 .
RefSeqi WP_011477436.1. NC_007940.1.
YP_537938.1. NC_007940.1.

3D structure databases

ProteinModelPortali Q1RIG5.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 336407.RBE_0768.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABE04849 ; ABE04849 ; RBE_0768 .
GeneIDi 3995482.
KEGGi rbe:RBE_0768.
PATRICi 17883025. VBIRicBel102610_0877.

Phylogenomic databases

eggNOGi COG0806.
HOGENOMi HOG000220989.
KOi K02860.
OMAi TIVAVPN.
OrthoDBi EOG6SBT2K.

Enzyme and pathway databases

BioCyci RBEL336407:GJCY-789-MONOMER.

Family and domain databases

Gene3Di 2.40.30.60. 1 hit.
HAMAPi MF_00014. Ribosome_mat_RimM.
InterProi IPR011961. 16S_RimM.
IPR027275. PRC-brl_dom.
IPR011033. PRC_barrel-like.
IPR002676. RimM.
IPR009000. Transl_B-barrel.
[Graphical view ]
Pfami PF05239. PRC. 1 hit.
PF01782. RimM. 1 hit.
[Graphical view ]
SUPFAMi SSF50346. SSF50346. 1 hit.
SSF50447. SSF50447. 1 hit.
TIGRFAMsi TIGR02273. 16S_RimM. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
    Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
    PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RML369-C.

Entry informationi

Entry nameiRIMM_RICBR
AccessioniPrimary (citable) accession number: Q1RIG5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 27, 2006
Last sequence update: May 16, 2006
Last modified: October 29, 2014
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Rickettsia bellii strain RML369-C
    Rickettsia bellii (strain RML369-C): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3