Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Putative pre-16S rRNA nuclease

Gene

RBE_0807

Organism
Rickettsia bellii (strain RML369-C)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Nuclease

Keywords - Biological processi

Ribosome biogenesis

Enzyme and pathway databases

BioCyciRBEL336407:GJCY-829-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative pre-16S rRNA nucleaseUniRule annotation (EC:3.1.-.-UniRule annotation)
Gene namesi
Ordered Locus Names:RBE_0807
OrganismiRickettsia bellii (strain RML369-C)
Taxonomic identifieri336407 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiabelli group
Proteomesi
  • UP000001951 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 154154Putative pre-16S rRNA nucleasePRO_0000257581Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliQ1RIC6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the YqgF nuclease family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000016953.
KOiK07447.
OMAiLYEEWQP.
OrthoDBiEOG6N94FV.

Family and domain databases

Gene3Di3.30.420.140. 1 hit.
HAMAPiMF_00651. Nuclease_YqgF.
InterProiIPR012337. RNaseH-like_dom.
IPR005227. YqgF.
IPR006641. YqgF/RNaseH-like_dom.
[Graphical view]
PfamiPF03652. RuvX. 1 hit.
[Graphical view]
SMARTiSM00732. YqgFc. 1 hit.
[Graphical view]
SUPFAMiSSF53098. SSF53098. 1 hit.
TIGRFAMsiTIGR00250. RNAse_H_YqgF. 1 hit.

Sequencei

Sequence statusi: Complete.

Q1RIC6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIINNLQEFY RLLLPNAPLI SIDYGSKKIG IAISNQERNI AMPLNIITEA
60 70 80 90 100
SKKAIIASLL EKIEQYKACG IVIGLPIDMS GMQTEQSAIV IKFAEELTKS
110 120 130 140 150
INLPIYLQDE RLTTKAANNF LKSFGIKRKE RNNNDDAVAA SMILETVLNS

INKL
Length:154
Mass (Da):17,138
Last modified:May 16, 2006 - v1
Checksum:i270A53CE4E4F7E4E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000087 Genomic DNA. Translation: ABE04888.1.
RefSeqiWP_011477475.1. NC_007940.1.

Genome annotation databases

EnsemblBacteriaiABE04888; ABE04888; RBE_0807.
KEGGirbe:RBE_0807.
PATRICi17883113. VBIRicBel102610_0920.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000087 Genomic DNA. Translation: ABE04888.1.
RefSeqiWP_011477475.1. NC_007940.1.

3D structure databases

ProteinModelPortaliQ1RIC6.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABE04888; ABE04888; RBE_0807.
KEGGirbe:RBE_0807.
PATRICi17883113. VBIRicBel102610_0920.

Phylogenomic databases

HOGENOMiHOG000016953.
KOiK07447.
OMAiLYEEWQP.
OrthoDBiEOG6N94FV.

Enzyme and pathway databases

BioCyciRBEL336407:GJCY-829-MONOMER.

Family and domain databases

Gene3Di3.30.420.140. 1 hit.
HAMAPiMF_00651. Nuclease_YqgF.
InterProiIPR012337. RNaseH-like_dom.
IPR005227. YqgF.
IPR006641. YqgF/RNaseH-like_dom.
[Graphical view]
PfamiPF03652. RuvX. 1 hit.
[Graphical view]
SMARTiSM00732. YqgFc. 1 hit.
[Graphical view]
SUPFAMiSSF53098. SSF53098. 1 hit.
TIGRFAMsiTIGR00250. RNAse_H_YqgF. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
    Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
    PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RML369-C.

Entry informationi

Entry nameiYQGF_RICBR
AccessioniPrimary (citable) accession number: Q1RIC6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 31, 2006
Last sequence update: May 16, 2006
Last modified: January 20, 2016
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Rickettsia bellii strain RML369-C
    Rickettsia bellii (strain RML369-C): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.