Q1RIC6 (RUVX_RICBR) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Putative Holliday junction resolvase
EC=3.1.-.-

Gene names

Ordered Locus Names:

RBE_0807

Organism

Rickettsia bellii (strain RML369-C) [Complete proteome] [HAMAP]

Taxonomic identifier

336407 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rickettsiales › Rickettsiaceae › Rickettsieae › Rickettsia › belli group › Rickettsia bellii

Protein attributes

Sequence length	154 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Could be a nuclease that resolves Holliday junction intermediates in genetic recombination By similarity. HAMAP-Rule MF_00651
Subcellular location	Cytoplasm Potential HAMAP-Rule MF_00651.
Sequence similarities	Belongs to the YqgF HJR family.

Ontologies

Keywords
Biological process	DNA damage DNA recombination DNA repair
Cellular component	Cytoplasm
Molecular function	Hydrolase Nuclease
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: HAMAP DNA repair Inferred from electronic annotation. Source: HAMAP nucleic acid phosphodiester bond hydrolysis Inferred from electronic annotation. Source: GOC
Cellular_component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	nuclease activity Inferred from electronic annotation. Source: UniProtKB-KW nucleic acid binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 154	154	Putative Holliday junction resolvase HAMAP-Rule MF_00651		PRO_0000257581

Sequences

	Sequence		Length	Mass (Da)
	Q1RIC6 [UniParc]. Last modified May 16, 2006. Version 1. Checksum: 270A53CE4E4F7E4E	FASTA	154	17,138
	10 20 30 40 50 60 MIINNLQEFY RLLLPNAPLI SIDYGSKKIG IAISNQERNI AMPLNIITEA SKKAIIASLL 70 80 90 100 110 120 EKIEQYKACG IVIGLPIDMS GMQTEQSAIV IKFAEELTKS INLPIYLQDE RLTTKAANNF 130 140 150 LKSFGIKRKE RNNNDDAVAA SMILETVLNS INKL

References

[1]

"Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens." Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D. PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: RML369-C.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000087 Genomic DNA. Translation: ABE04888.1.
RefSeq	YP_537977.1. NC_007940.1.
3D structure databases
ProteinModelPortal	Q1RIC6.
ModBase	Search...
Protein-protein interaction databases
STRING	336407.RBE_0807.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABE04888; ABE04888; RBE_0807.
GeneID	3996270.
KEGG	rbe:RBE_0807.
PATRIC	17883113. VBIRicBel102610_0920.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0816.
HOGENOM	HOG000016953.
KO	K07447.
OMA	ERSIAMP.
ProtClustDB	PRK00109.
Enzyme and pathway databases
BioCyc	RBEL336407:GJCY-829-MONOMER.
Family and domain databases
Gene3D	3.30.420.140. 1 hit.
HAMAP	MF_00651. HJR_YqgF.
InterPro	IPR005227. Resolv_Hlld_junc_YqgF-like. IPR012337. RNaseH-like_dom. IPR006641. YqgF/RNaseH-like_dom. [Graphical view]
Pfam	PF03652. UPF0081. 1 hit. [Graphical view]
SMART	SM00732. YqgFc. 1 hit. [Graphical view]
SUPFAM	SSF53098. RNaseH_fold. 1 hit.
TIGRFAMs	TIGR00250. RNAse_H_YqgF. 1 hit.
ProtoNet	Search...

Entry information

Entry name

RUVX_RICBR

Accession

Primary (citable) accession number: Q1RIC6

Entry history

Integrated into UniProtKB/Swiss-Prot:	October 31, 2006
Last sequence update:	May 16, 2006
Last modified:	May 1, 2013
This is version 46 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program