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Q1RIC6 (RUVX_RICBR) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 52. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Putative Holliday junction resolvase

EC=3.1.-.-
Gene names
Ordered Locus Names:RBE_0807
OrganismRickettsia bellii (strain RML369-C) [Complete proteome] [HAMAP]
Taxonomic identifier336407 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiabelli group

Protein attributes

Sequence length154 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Could be a nuclease that resolves Holliday junction intermediates in genetic recombination By similarity. HAMAP-Rule MF_00651

Subcellular location

Cytoplasm Potential HAMAP-Rule MF_00651.

Sequence similarities

Belongs to the YqgF HJR family.

Ontologies

Keywords
   Biological processDNA damage
DNA recombination
DNA repair
   Cellular componentCytoplasm
   Molecular functionHydrolase
Nuclease
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: UniProtKB-KW

DNA repair

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionnuclease activity

Inferred from electronic annotation. Source: UniProtKB-KW

nucleic acid binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 154154Putative Holliday junction resolvase HAMAP-Rule MF_00651
PRO_0000257581

Sequences

Sequence LengthMass (Da)Tools
Q1RIC6 [UniParc].

Last modified May 16, 2006. Version 1.
Checksum: 270A53CE4E4F7E4E

FASTA15417,138
        10         20         30         40         50         60 
MIINNLQEFY RLLLPNAPLI SIDYGSKKIG IAISNQERNI AMPLNIITEA SKKAIIASLL 

        70         80         90        100        110        120 
EKIEQYKACG IVIGLPIDMS GMQTEQSAIV IKFAEELTKS INLPIYLQDE RLTTKAANNF 

       130        140        150 
LKSFGIKRKE RNNNDDAVAA SMILETVLNS INKL 

« Hide

References

[1]"Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: RML369-C.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000087 Genomic DNA. Translation: ABE04888.1.
RefSeqYP_537977.1. NC_007940.1.

3D structure databases

ProteinModelPortalQ1RIC6.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING336407.RBE_0807.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABE04888; ABE04888; RBE_0807.
GeneID3996270.
KEGGrbe:RBE_0807.
PATRIC17883113. VBIRicBel102610_0920.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0816.
HOGENOMHOG000016953.
KOK07447.
OMAAVILQGW.
OrthoDBEOG6N94FV.

Enzyme and pathway databases

BioCycRBEL336407:GJCY-829-MONOMER.

Family and domain databases

Gene3D3.30.420.140. 1 hit.
HAMAPMF_00651. HJR_YqgF.
InterProIPR005227. Resolv_Hlld_junc_YqgF-like.
IPR012337. RNaseH-like_dom.
IPR006641. YqgF/RNaseH-like_dom.
[Graphical view]
PfamPF03652. UPF0081. 1 hit.
[Graphical view]
SMARTSM00732. YqgFc. 1 hit.
[Graphical view]
SUPFAMSSF53098. SSF53098. 1 hit.
TIGRFAMsTIGR00250. RNAse_H_YqgF. 1 hit.
ProtoNetSearch...

Entry information

Entry nameRUVX_RICBR
AccessionPrimary (citable) accession number: Q1RIC6
Entry history
Integrated into UniProtKB/Swiss-Prot: October 31, 2006
Last sequence update: May 16, 2006
Last modified: May 14, 2014
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rickettsia bellii strain RML369-C

Rickettsia bellii (strain RML369-C): entries and gene names