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Q1RI71

- RL25_RICBR

UniProt

Q1RI71 - RL25_RICBR

Protein

50S ribosomal protein L25

Gene

rplY

Organism
Rickettsia bellii (strain RML369-C)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 52 (01 Oct 2014)
      Sequence version 1 (16 May 2006)
      Previous versions | rss
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    Functioni

    This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance.UniRule annotation

    GO - Molecular functioni

    1. 5S rRNA binding Source: InterPro
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciRBEL336407:GJCY-884-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L25UniRule annotation
    Alternative name(s):
    General stress protein CTCUniRule annotation
    Gene namesi
    Name:rplYUniRule annotation
    Synonyms:ctcUniRule annotation
    Ordered Locus Names:RBE_0862
    OrganismiRickettsia bellii (strain RML369-C)
    Taxonomic identifieri336407 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiabelli group
    ProteomesiUP000001951: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 20220250S ribosomal protein L25PRO_0000244239Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18.UniRule annotation

    Protein-protein interaction databases

    STRINGi336407.RBE_0862.

    Structurei

    3D structure databases

    ProteinModelPortaliQ1RI71.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L25P family. CTC subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1825.
    HOGENOMiHOG000214907.
    KOiK02897.
    OMAiIPVHFIN.
    OrthoDBiEOG6SZ1PC.

    Family and domain databases

    Gene3Di2.170.120.20. 1 hit.
    2.40.240.10. 1 hit.
    HAMAPiMF_01334. Ribosomal_L25_CTC.
    MF_01336. Ribosomal_L25.
    InterProiIPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
    IPR011035. Ribosomal_L25/Gln-tRNA_synth.
    IPR020057. Ribosomal_L25_b-dom.
    IPR001021. Ribosomal_L25_long.
    IPR020055. Ribosomal_L25_short.
    [Graphical view]
    PfamiPF14693. Ribosomal_TL5_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF50715. SSF50715. 1 hit.
    TIGRFAMsiTIGR00731. ctc_TL5. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q1RI71-1 [UniParc]FASTAAdd to Basket

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    MSEILELEAK SRNEFGTGAA RALRREGRVP AIIYGAKKTP VSISLEEKEI    50
    TKYYRKPAFI SQLINLTIEG TQYKVLPKAV ELHPVTDIVR HVDFVFLEDK 100
    TQKMEVPVVY EGKERALGVK RGGYFNIVKR RVTLLCDVNN IPRNVTIDVT 150
    NMPIATSLKS SKVKLPEGCS FTTKKEFVLA TIIGRRGAKT EAEGEQTAEA 200
    AK 202
    Length:202
    Mass (Da):22,553
    Last modified:May 16, 2006 - v1
    Checksum:i376246DAEF593B05
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000087 Genomic DNA. Translation: ABE04943.1.
    RefSeqiYP_538032.1. NC_007940.1.

    Genome annotation databases

    EnsemblBacteriaiABE04943; ABE04943; RBE_0862.
    GeneIDi3995558.
    KEGGirbe:RBE_0862.
    PATRICi17883235. VBIRicBel102610_0981.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000087 Genomic DNA. Translation: ABE04943.1 .
    RefSeqi YP_538032.1. NC_007940.1.

    3D structure databases

    ProteinModelPortali Q1RI71.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 336407.RBE_0862.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABE04943 ; ABE04943 ; RBE_0862 .
    GeneIDi 3995558.
    KEGGi rbe:RBE_0862.
    PATRICi 17883235. VBIRicBel102610_0981.

    Phylogenomic databases

    eggNOGi COG1825.
    HOGENOMi HOG000214907.
    KOi K02897.
    OMAi IPVHFIN.
    OrthoDBi EOG6SZ1PC.

    Enzyme and pathway databases

    BioCyci RBEL336407:GJCY-884-MONOMER.

    Family and domain databases

    Gene3Di 2.170.120.20. 1 hit.
    2.40.240.10. 1 hit.
    HAMAPi MF_01334. Ribosomal_L25_CTC.
    MF_01336. Ribosomal_L25.
    InterProi IPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
    IPR011035. Ribosomal_L25/Gln-tRNA_synth.
    IPR020057. Ribosomal_L25_b-dom.
    IPR001021. Ribosomal_L25_long.
    IPR020055. Ribosomal_L25_short.
    [Graphical view ]
    Pfami PF14693. Ribosomal_TL5_C. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50715. SSF50715. 1 hit.
    TIGRFAMsi TIGR00731. ctc_TL5. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
      Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
      PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: RML369-C.

    Entry informationi

    Entry nameiRL25_RICBR
    AccessioniPrimary (citable) accession number: Q1RI71
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: June 27, 2006
    Last sequence update: May 16, 2006
    Last modified: October 1, 2014
    This is version 52 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Ribosomal proteins
      Ribosomal proteins families and list of entries
    2. Rickettsia bellii strain RML369-C
      Rickettsia bellii (strain RML369-C): entries and gene names
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3