Q1RI71 (RL25_RICBR) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
50S ribosomal protein L25

Alternative name(s):
General stress protein CTC

Gene names

Name:	rplY
Synonyms:	ctc
Ordered Locus Names:	RBE_0862

Organism

Rickettsia bellii (strain RML369-C) [Complete proteome] [HAMAP]

Taxonomic identifier

336407 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rickettsiales › Rickettsiaceae › Rickettsieae › Rickettsia › belli group › Rickettsia bellii

Protein attributes

Sequence length	202 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance By similarity. HAMAP-Rule MF_01334
Subunit structure	Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18 By similarity.
Sequence similarities	Belongs to the ribosomal protein L25P family. Ctc subfamily.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: InterPro
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	5S rRNA binding Inferred from electronic annotation. Source: InterPro structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 202	202	50S ribosomal protein L25 HAMAP-Rule MF_01334		PRO_0000244239

Sequences

	Sequence		Length	Mass (Da)
	Q1RI71 [UniParc]. Last modified May 16, 2006. Version 1. Checksum: 376246DAEF593B05	FASTA	202	22,553
	10 20 30 40 50 60 MSEILELEAK SRNEFGTGAA RALRREGRVP AIIYGAKKTP VSISLEEKEI TKYYRKPAFI 70 80 90 100 110 120 SQLINLTIEG TQYKVLPKAV ELHPVTDIVR HVDFVFLEDK TQKMEVPVVY EGKERALGVK 130 140 150 160 170 180 RGGYFNIVKR RVTLLCDVNN IPRNVTIDVT NMPIATSLKS SKVKLPEGCS FTTKKEFVLA 190 200 TIIGRRGAKT EAEGEQTAEA AK

References

[1]

"Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens." Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D. PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: RML369-C.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000087 Genomic DNA. Translation: ABE04943.1.
RefSeq	YP_538032.1. NC_007940.1.
3D structure databases
ProteinModelPortal	Q1RI71.
ModBase	Search...
Protein-protein interaction databases
STRING	336407.RBE_0862.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABE04943; ABE04943; RBE_0862.
GeneID	3995558.
KEGG	rbe:RBE_0862.
PATRIC	17883235. VBIRicBel102610_0981.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1825.
HOGENOM	HOG000214907.
KO	K02897.
OMA	RDFTMHV.
ProtClustDB	PRK05618.
Enzyme and pathway databases
BioCyc	RBEL336407:GJCY-884-MONOMER.
Family and domain databases
Gene3D	2.170.120.20. 1 hit. 2.40.240.10. 1 hit.
HAMAP	MF_01334. Ribosomal_L25_CTC.
InterPro	IPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl. IPR011035. Ribosomal_L25/Gln-tRNA_synth. IPR020057. Ribosomal_L25_b-dom. IPR001021. Ribosomal_L25_long. IPR020055. Ribosomal_L25_short. [Graphical view]
Pfam	PF01386. Ribosomal_L25p. 1 hit. [Graphical view]
ProDom	PD012503. Ribosomal_L25. 1 hit. [Graphical view] [Entries sharing at least one domain]
SUPFAM	SSF50715. Ribosomal_L25rel. 1 hit.
TIGRFAMs	TIGR00731. ctc_TL5. 1 hit.
ProtoNet	Search...

Entry information

Entry name

RL25_RICBR

Accession

Primary (citable) accession number: Q1RI71

Entry history

Integrated into UniProtKB/Swiss-Prot:	June 27, 2006
Last sequence update:	May 16, 2006
Last modified:	May 1, 2013
This is version 43 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program