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Q1RI71 (RL25_RICBR) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 48. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L25
Alternative name(s):
General stress protein CTC
Gene names
Name:rplY
Synonyms:ctc
Ordered Locus Names:RBE_0862
OrganismRickettsia bellii (strain RML369-C) [Complete proteome] [HAMAP]
Taxonomic identifier336407 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiabelli group

Protein attributes

Sequence length202 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance By similarity. HAMAP-Rule MF_01334

Subunit structure

Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18 By similarity.

Sequence similarities

Belongs to the ribosomal protein L25P family. CTC subfamily.

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_function5S rRNA binding

Inferred from electronic annotation. Source: InterPro

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 20220250S ribosomal protein L25 HAMAP-Rule MF_01334
PRO_0000244239

Sequences

Sequence LengthMass (Da)Tools
Q1RI71 [UniParc].

Last modified May 16, 2006. Version 1.
Checksum: 376246DAEF593B05

FASTA20222,553
        10         20         30         40         50         60 
MSEILELEAK SRNEFGTGAA RALRREGRVP AIIYGAKKTP VSISLEEKEI TKYYRKPAFI 

        70         80         90        100        110        120 
SQLINLTIEG TQYKVLPKAV ELHPVTDIVR HVDFVFLEDK TQKMEVPVVY EGKERALGVK 

       130        140        150        160        170        180 
RGGYFNIVKR RVTLLCDVNN IPRNVTIDVT NMPIATSLKS SKVKLPEGCS FTTKKEFVLA 

       190        200 
TIIGRRGAKT EAEGEQTAEA AK 

« Hide

References

[1]"Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: RML369-C.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000087 Genomic DNA. Translation: ABE04943.1.
RefSeqYP_538032.1. NC_007940.1.

3D structure databases

ProteinModelPortalQ1RI71.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING336407.RBE_0862.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABE04943; ABE04943; RBE_0862.
GeneID3995558.
KEGGrbe:RBE_0862.
PATRIC17883235. VBIRicBel102610_0981.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1825.
HOGENOMHOG000214907.
KOK02897.
OMAIPVHFIN.
OrthoDBEOG6SZ1PC.
ProtClustDBPRK05618.

Enzyme and pathway databases

BioCycRBEL336407:GJCY-884-MONOMER.

Family and domain databases

Gene3D2.170.120.20. 1 hit.
2.40.240.10. 1 hit.
HAMAPMF_01334. Ribosomal_L25_CTC.
MF_01336. Ribosomal_L25.
InterProIPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
IPR011035. Ribosomal_L25/Gln-tRNA_synth.
IPR020057. Ribosomal_L25_b-dom.
IPR001021. Ribosomal_L25_long.
IPR020055. Ribosomal_L25_short.
[Graphical view]
PfamPF01386. Ribosomal_L25p. 1 hit.
[Graphical view]
ProDomPD012503. Ribosomal_L25. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMSSF50715. SSF50715. 1 hit.
TIGRFAMsTIGR00731. ctc_TL5. 1 hit.
ProtoNetSearch...

Entry information

Entry nameRL25_RICBR
AccessionPrimary (citable) accession number: Q1RI71
Entry history
Integrated into UniProtKB/Swiss-Prot: June 27, 2006
Last sequence update: May 16, 2006
Last modified: February 19, 2014
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rickettsia bellii strain RML369-C

Rickettsia bellii (strain RML369-C): entries and gene names

Ribosomal proteins

Ribosomal proteins families and list of entries