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Q1RI04

- DNAB_RICBR

UniProt

Q1RI04 - DNAB_RICBR

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Protein

Replicative DNA helicase

Gene
dnaB, RBE_0929
Organism
Rickettsia bellii (strain RML369-C)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins By similarity.

Catalytic activityi

ATP + H2O = ADP + phosphate.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi228 – 2358ATP Reviewed prediction

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: UniProtKB-KW
  3. DNA helicase activity Source: InterPro

GO - Biological processi

  1. DNA replication, synthesis of RNA primer Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Helicase, Hydrolase

Keywords - Biological processi

DNA replication

Keywords - Ligandi

ATP-binding, DNA-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciRBEL336407:GJCY-954-MONOMER.
RETL1328306-WGS:GSTH-1448-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Replicative DNA helicase (EC:3.6.4.12)
Gene namesi
Name:dnaB
Ordered Locus Names:RBE_0929
OrganismiRickettsia bellii (strain RML369-C)
Taxonomic identifieri336407 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiabelli group
ProteomesiUP000001951: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. primosome complex Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Primosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 498498Replicative DNA helicasePRO_0000281066Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi336407.RBE_0929.

Structurei

3D structure databases

ProteinModelPortaliQ1RI04.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini197 – 493297SF4 helicaseAdd
BLAST

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0305.
HOGENOMiHOG000113195.
KOiK02314.
OMAiVFFDPLH.
OrthoDBiEOG6T4RW5.

Family and domain databases

Gene3Di1.10.860.10. 1 hit.
3.40.50.300. 1 hit.
InterProiIPR007692. DNA_helicase_DnaB.
IPR007694. DNA_helicase_DnaB-like_C.
IPR007693. DNA_helicase_DnaB-like_N.
IPR016136. DNA_helicase_N/primase_C.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00772. DnaB. 1 hit.
PF03796. DnaB_C. 1 hit.
[Graphical view]
SUPFAMiSSF48024. SSF48024. 1 hit.
SSF52540. SSF52540. 2 hits.
TIGRFAMsiTIGR00665. DnaB. 1 hit.
PROSITEiPS51199. SF4_HELICASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q1RI04-1 [UniParc]FASTAAdd to Basket

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MARNKTNNDK NIANDEASTV LARVLPSNVQ AEQMLLGAIL TNNELLNYVS    50
EFLRSEHFFE PIHQKIYNGI EVITEKGLIA TPITLRSMLA NDELFHEMEG 100
AEYLAKLVTM SMMVINPIDY GKIIYDLAIK RYLINIGEEV VNDAYNSSLE 150
FEAKEQIERA ESKLYDLASE GINEKSFTKI AIPISESIAS INRAMKNNDH 200
VIGISTGLID LDSKLFGFHN SDLVILAGRP AMGKTAFALN LALNACNNML 250
IKNKRDNEEV QSVGFFSLEM SSEQLTTRLL SMSAGIDSTT LRTGMINEAN 300
YNRLRKEAIA LSELSFFIDD TPALTISAIR TRARRMKRKH NLGILFVDYL 350
QLIRGVSKSD NRVNEVSEIT QGLKAIAKEL NIPVIALSQL SRAVELREDK 400
RPMLSDLRES GSIEQDADIV MFIYREEYYL SRKEPAASDP KHAEKYAEWQ 450
DNMSKAHNIT DIIIAKHRSG PVGNVQLFYD SQYSKFVNLE TKYPVHPR 498
Length:498
Mass (Da):56,183
Last modified:May 16, 2006 - v1
Checksum:i6E0500E572F93C08
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000087 Genomic DNA. Translation: ABE05010.1.
RefSeqiYP_538099.1. NC_007940.1.

Genome annotation databases

EnsemblBacteriaiABE05010; ABE05010; RBE_0929.
GeneIDi3994940.
KEGGirbe:RBE_0929.
PATRICi17883391. VBIRicBel102610_1056.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000087 Genomic DNA. Translation: ABE05010.1 .
RefSeqi YP_538099.1. NC_007940.1.

3D structure databases

ProteinModelPortali Q1RI04.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 336407.RBE_0929.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABE05010 ; ABE05010 ; RBE_0929 .
GeneIDi 3994940.
KEGGi rbe:RBE_0929.
PATRICi 17883391. VBIRicBel102610_1056.

Phylogenomic databases

eggNOGi COG0305.
HOGENOMi HOG000113195.
KOi K02314.
OMAi VFFDPLH.
OrthoDBi EOG6T4RW5.

Enzyme and pathway databases

BioCyci RBEL336407:GJCY-954-MONOMER.
RETL1328306-WGS:GSTH-1448-MONOMER.

Family and domain databases

Gene3Di 1.10.860.10. 1 hit.
3.40.50.300. 1 hit.
InterProi IPR007692. DNA_helicase_DnaB.
IPR007694. DNA_helicase_DnaB-like_C.
IPR007693. DNA_helicase_DnaB-like_N.
IPR016136. DNA_helicase_N/primase_C.
IPR027417. P-loop_NTPase.
[Graphical view ]
Pfami PF00772. DnaB. 1 hit.
PF03796. DnaB_C. 1 hit.
[Graphical view ]
SUPFAMi SSF48024. SSF48024. 1 hit.
SSF52540. SSF52540. 2 hits.
TIGRFAMsi TIGR00665. DnaB. 1 hit.
PROSITEi PS51199. SF4_HELICASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
    Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
    PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RML369-C.

Entry informationi

Entry nameiDNAB_RICBR
AccessioniPrimary (citable) accession number: Q1RI04
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 20, 2007
Last sequence update: May 16, 2006
Last modified: July 9, 2014
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Rickettsia bellii strain RML369-C
    Rickettsia bellii (strain RML369-C): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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