Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Q1RHU0

- RPOZ_RICBR

UniProt

Q1RHU0 - RPOZ_RICBR

Protein

DNA-directed RNA polymerase subunit omega

Gene

rpoZ

Organism
Rickettsia bellii (strain RML369-C)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
  1. Functioni

    Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.UniRule annotation

    Catalytic activityi

    Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-HAMAP
    2. DNA-directed RNA polymerase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. transcription, DNA-templated Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Nucleotidyltransferase, Transferase

    Keywords - Biological processi

    Transcription

    Enzyme and pathway databases

    BioCyciRBEL336407:GJCY-1020-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA-directed RNA polymerase subunit omegaUniRule annotation (EC:2.7.7.6UniRule annotation)
    Short name:
    RNAP omega subunitUniRule annotation
    Alternative name(s):
    RNA polymerase omega subunitUniRule annotation
    Transcriptase subunit omegaUniRule annotation
    Gene namesi
    Name:rpoZUniRule annotation
    Ordered Locus Names:RBE_0993
    OrganismiRickettsia bellii (strain RML369-C)
    Taxonomic identifieri336407 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiabelli group
    ProteomesiUP000001951: Chromosome

    Subcellular locationi

    Keywords - Cellular componenti

    DNA-directed RNA polymerase

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 126126DNA-directed RNA polymerase subunit omegaPRO_0000277967Add
    BLAST

    Interactioni

    Subunit structurei

    The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.UniRule annotation

    Protein-protein interaction databases

    STRINGi336407.RBE_0993.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the RNA polymerase subunit omega family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1758.
    HOGENOMiHOG000245721.
    KOiK03060.
    OMAiCITEDYS.
    OrthoDBiEOG6Q5NV5.

    Family and domain databases

    Gene3Di3.90.940.10. 1 hit.
    HAMAPiMF_00366. RNApol_bact_RpoZ.
    InterProiIPR003716. DNA-dir_RNA_pol_omega.
    IPR006110. Pol_omega/K/RPB6.
    IPR012293. RNAP_RPB6_omega.
    [Graphical view]
    PfamiPF01192. RNA_pol_Rpb6. 1 hit.
    [Graphical view]
    SUPFAMiSSF63562. SSF63562. 1 hit.
    TIGRFAMsiTIGR00690. rpoZ. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q1RHU0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MARITTEDCS KVIPDRFQLV IYATRYAKLL NYKVETNQSK KEKRDKPPVI    50
    ALRRIASGKV SVAQLEQDFI NSLRTRSRIE PIVEQDESED LEEKFEYLPE 100
    VYIGEDYSDL DDQIFTEETG EDFEDK 126
    Length:126
    Mass (Da):14,772
    Last modified:May 16, 2006 - v1
    Checksum:iAF002A1A5AF0304E
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000087 Genomic DNA. Translation: ABE05074.1.
    RefSeqiWP_011477654.1. NC_007940.1.
    YP_538163.1. NC_007940.1.

    Genome annotation databases

    EnsemblBacteriaiABE05074; ABE05074; RBE_0993.
    GeneIDi3994962.
    KEGGirbe:RBE_0993.
    PATRICi17883533. VBIRicBel102610_1125.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000087 Genomic DNA. Translation: ABE05074.1 .
    RefSeqi WP_011477654.1. NC_007940.1.
    YP_538163.1. NC_007940.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 336407.RBE_0993.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABE05074 ; ABE05074 ; RBE_0993 .
    GeneIDi 3994962.
    KEGGi rbe:RBE_0993.
    PATRICi 17883533. VBIRicBel102610_1125.

    Phylogenomic databases

    eggNOGi COG1758.
    HOGENOMi HOG000245721.
    KOi K03060.
    OMAi CITEDYS.
    OrthoDBi EOG6Q5NV5.

    Enzyme and pathway databases

    BioCyci RBEL336407:GJCY-1020-MONOMER.

    Family and domain databases

    Gene3Di 3.90.940.10. 1 hit.
    HAMAPi MF_00366. RNApol_bact_RpoZ.
    InterProi IPR003716. DNA-dir_RNA_pol_omega.
    IPR006110. Pol_omega/K/RPB6.
    IPR012293. RNAP_RPB6_omega.
    [Graphical view ]
    Pfami PF01192. RNA_pol_Rpb6. 1 hit.
    [Graphical view ]
    SUPFAMi SSF63562. SSF63562. 1 hit.
    TIGRFAMsi TIGR00690. rpoZ. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
      Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
      PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: RML369-C.

    Entry informationi

    Entry nameiRPOZ_RICBR
    AccessioniPrimary (citable) accession number: Q1RHU0
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 20, 2007
    Last sequence update: May 16, 2006
    Last modified: October 1, 2014
    This is version 52 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Rickettsia bellii strain RML369-C
      Rickettsia bellii (strain RML369-C): entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3