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Q1RHU0

- RPOZ_RICBR

UniProt

Q1RHU0 - RPOZ_RICBR

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Protein

DNA-directed RNA polymerase subunit omega

Gene

rpoZ

Organism
Rickettsia bellii (strain RML369-C)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.UniRule annotation

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-HAMAP
  2. DNA-directed RNA polymerase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. transcription, DNA-templated Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Nucleotidyltransferase, Transferase

Keywords - Biological processi

Transcription

Enzyme and pathway databases

BioCyciRBEL336407:GJCY-1020-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit omegaUniRule annotation (EC:2.7.7.6UniRule annotation)
Short name:
RNAP omega subunitUniRule annotation
Alternative name(s):
RNA polymerase omega subunitUniRule annotation
Transcriptase subunit omegaUniRule annotation
Gene namesi
Name:rpoZUniRule annotation
Ordered Locus Names:RBE_0993
OrganismiRickettsia bellii (strain RML369-C)
Taxonomic identifieri336407 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiabelli group
ProteomesiUP000001951: Chromosome

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymerase

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 126126DNA-directed RNA polymerase subunit omegaPRO_0000277967Add
BLAST

Interactioni

Subunit structurei

The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.UniRule annotation

Protein-protein interaction databases

STRINGi336407.RBE_0993.

Family & Domainsi

Sequence similaritiesi

Belongs to the RNA polymerase subunit omega family.UniRule annotation

Phylogenomic databases

eggNOGiCOG1758.
HOGENOMiHOG000245721.
KOiK03060.
OMAiCITEDYS.
OrthoDBiEOG6Q5NV5.

Family and domain databases

Gene3Di3.90.940.10. 1 hit.
HAMAPiMF_00366. RNApol_bact_RpoZ.
InterProiIPR003716. DNA-dir_RNA_pol_omega.
IPR006110. Pol_omega/K/RPB6.
IPR012293. RNAP_RPB6_omega.
[Graphical view]
PfamiPF01192. RNA_pol_Rpb6. 1 hit.
[Graphical view]
SUPFAMiSSF63562. SSF63562. 1 hit.
TIGRFAMsiTIGR00690. rpoZ. 1 hit.

Sequencei

Sequence statusi: Complete.

Q1RHU0-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MARITTEDCS KVIPDRFQLV IYATRYAKLL NYKVETNQSK KEKRDKPPVI
60 70 80 90 100
ALRRIASGKV SVAQLEQDFI NSLRTRSRIE PIVEQDESED LEEKFEYLPE
110 120
VYIGEDYSDL DDQIFTEETG EDFEDK
Length:126
Mass (Da):14,772
Last modified:May 16, 2006 - v1
Checksum:iAF002A1A5AF0304E
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000087 Genomic DNA. Translation: ABE05074.1.
RefSeqiWP_011477654.1. NC_007940.1.
YP_538163.1. NC_007940.1.

Genome annotation databases

EnsemblBacteriaiABE05074; ABE05074; RBE_0993.
GeneIDi3994962.
KEGGirbe:RBE_0993.
PATRICi17883533. VBIRicBel102610_1125.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000087 Genomic DNA. Translation: ABE05074.1 .
RefSeqi WP_011477654.1. NC_007940.1.
YP_538163.1. NC_007940.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 336407.RBE_0993.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABE05074 ; ABE05074 ; RBE_0993 .
GeneIDi 3994962.
KEGGi rbe:RBE_0993.
PATRICi 17883533. VBIRicBel102610_1125.

Phylogenomic databases

eggNOGi COG1758.
HOGENOMi HOG000245721.
KOi K03060.
OMAi CITEDYS.
OrthoDBi EOG6Q5NV5.

Enzyme and pathway databases

BioCyci RBEL336407:GJCY-1020-MONOMER.

Family and domain databases

Gene3Di 3.90.940.10. 1 hit.
HAMAPi MF_00366. RNApol_bact_RpoZ.
InterProi IPR003716. DNA-dir_RNA_pol_omega.
IPR006110. Pol_omega/K/RPB6.
IPR012293. RNAP_RPB6_omega.
[Graphical view ]
Pfami PF01192. RNA_pol_Rpb6. 1 hit.
[Graphical view ]
SUPFAMi SSF63562. SSF63562. 1 hit.
TIGRFAMsi TIGR00690. rpoZ. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
    Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
    PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RML369-C.

Entry informationi

Entry nameiRPOZ_RICBR
AccessioniPrimary (citable) accession number: Q1RHU0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 20, 2007
Last sequence update: May 16, 2006
Last modified: October 1, 2014
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Rickettsia bellii strain RML369-C
    Rickettsia bellii (strain RML369-C): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3