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Q1RHT1 (XERD_RICBR) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 56. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Tyrosine recombinase XerD
Gene names
Name:xerD
Ordered Locus Names:RBE_1002
OrganismRickettsia bellii (strain RML369-C) [Complete proteome] [HAMAP]
Taxonomic identifier336407 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiabelli group

Protein attributes

Sequence length305 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC-XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids By similarity. HAMAP-Rule MF_01807

Subunit structure

Forms a cyclic heterotetrameric complex composed of two molecules of XerC and two molecules of XerD By similarity.

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_01807.

Sequence similarities

Belongs to the 'phage' integrase family. XerD subfamily.

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 305305Tyrosine recombinase XerD HAMAP-Rule MF_01807
PRO_0000272368

Sites

Active site1451 By similarity
Active site1751 By similarity
Active site2501 By similarity
Active site2531 By similarity
Active site2761 By similarity
Active site2851O-(3'-phospho-DNA)-tyrosine intermediate By similarity

Sequences

Sequence LengthMass (Da)Tools
Q1RHT1 [UniParc].

Last modified May 16, 2006. Version 1.
Checksum: B98383395AFBC544

FASTA30534,689
        10         20         30         40         50         60 
MEFISQFLEM LLAERALSKN SILSYKRDLL DFHNYLAKQK LSELNITTDN IRNWVEYLAE 

        70         80         90        100        110        120 
NSLQARSINR KISTIKSYYE FLISENHTNL NPLLNIDLPK YQNKLPEILS IDDIKSLLEY 

       130        140        150        160        170        180 
CSQDISPEGA RLNAMIHLLY ASGLRVSELV SLKLSDILSN KVSREVKKIF SVLGKGNKER 

       190        200        210        220        230        240 
IIVINEPAIN SLVKYLVVRD NFVNKTKPKN LIYLFPSSAA AGYMTRQNFA ILLKSAALYA 

       250        260        270        280        290        300 
GLNPEHISPH VLRHSFASHL LEGGADLRVI QELLGHADIS TTQIYTHLQT NHLKKALLHH 


PLSKN 

« Hide

References

[1]"Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: RML369-C.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000087 Genomic DNA. Translation: ABE05083.1.
RefSeqYP_538172.1. NC_007940.1.

3D structure databases

ProteinModelPortalQ1RHT1.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING336407.RBE_1002.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABE05083; ABE05083; RBE_1002.
GeneID3995364.
KEGGrbe:RBE_1002.
PATRIC17883555. VBIRicBel102610_1135.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG4974.
HOGENOMHOG000045296.
KOK04763.
OMAYLAFRVE.
OrthoDBEOG6PZXFP.
ProtClustDBPRK00283.

Enzyme and pathway databases

BioCycRBEL336407:GJCY-1030-MONOMER.

Family and domain databases

Gene3D1.10.150.130. 1 hit.
1.10.443.10. 1 hit.
HAMAPMF_01807. Recomb_XerD.
MF_01808. Recomb_XerC.
InterProIPR011010. DNA_brk_join_enz.
IPR013762. Integrase-like_cat-core.
IPR002104. Integrase_catalytic.
IPR023109. Integrase_recombinase_N.
IPR004107. Integrase_SAM-like_N.
IPR011932. Recomb_XerD.
IPR023009. Tyrosine_recombinase_XerC/XerD.
[Graphical view]
PfamPF02899. Phage_int_SAM_1. 1 hit.
PF00589. Phage_integrase. 1 hit.
[Graphical view]
SUPFAMSSF56349. SSF56349. 1 hit.
ProtoNetSearch...

Entry information

Entry nameXERD_RICBR
AccessionPrimary (citable) accession number: Q1RHT1
Entry history
Integrated into UniProtKB/Swiss-Prot: January 23, 2007
Last sequence update: May 16, 2006
Last modified: February 19, 2014
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rickettsia bellii strain RML369-C

Rickettsia bellii (strain RML369-C): entries and gene names