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Q1RHT1

- XERD_RICBR

UniProt

Q1RHT1 - XERD_RICBR

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Protein

Tyrosine recombinase XerD

Gene

xerD

Organism
Rickettsia bellii (strain RML369-C)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC-XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei145 – 1451UniRule annotation
Active sitei175 – 1751UniRule annotation
Active sitei250 – 2501UniRule annotation
Active sitei253 – 2531UniRule annotation
Active sitei276 – 2761UniRule annotation
Active sitei285 – 2851O-(3'-phospho-DNA)-tyrosine intermediateUniRule annotation

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. tyrosine-based site-specific recombinase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. cell cycle Source: UniProtKB-KW
  2. cell division Source: UniProtKB-KW
  3. chromosome segregation Source: UniProtKB-HAMAP
  4. transposition, DNA-mediated Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Biological processi

Cell cycle, Cell division, Chromosome partition, DNA integration, DNA recombination

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciRBEL336407:GJCY-1030-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Tyrosine recombinase XerDUniRule annotation
Gene namesi
Name:xerDUniRule annotation
Ordered Locus Names:RBE_1002
OrganismiRickettsia bellii (strain RML369-C)
Taxonomic identifieri336407 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiabelli group
ProteomesiUP000001951: Chromosome

Subcellular locationi

Cytoplasm UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 305305Tyrosine recombinase XerDPRO_0000272368Add
BLAST

Interactioni

Subunit structurei

Forms a cyclic heterotetrameric complex composed of two molecules of XerC and two molecules of XerD.UniRule annotation

Protein-protein interaction databases

STRINGi336407.RBE_1002.

Structurei

3D structure databases

ProteinModelPortaliQ1RHT1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the 'phage' integrase family. XerD subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG4974.
HOGENOMiHOG000045296.
KOiK04763.
OMAiPMGELAI.
OrthoDBiEOG6PZXFP.

Family and domain databases

Gene3Di1.10.150.130. 1 hit.
1.10.443.10. 1 hit.
HAMAPiMF_01807. Recomb_XerD.
MF_01808. Recomb_XerC.
InterProiIPR011010. DNA_brk_join_enz.
IPR013762. Integrase-like_cat-core.
IPR002104. Integrase_catalytic.
IPR023109. Integrase_recombinase_N.
IPR004107. Integrase_SAM-like_N.
IPR011932. Recomb_XerD.
IPR023009. Tyrosine_recombinase_XerC/XerD.
[Graphical view]
PfamiPF02899. Phage_int_SAM_1. 1 hit.
PF00589. Phage_integrase. 1 hit.
[Graphical view]
SUPFAMiSSF56349. SSF56349. 1 hit.

Sequencei

Sequence statusi: Complete.

Q1RHT1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MEFISQFLEM LLAERALSKN SILSYKRDLL DFHNYLAKQK LSELNITTDN
60 70 80 90 100
IRNWVEYLAE NSLQARSINR KISTIKSYYE FLISENHTNL NPLLNIDLPK
110 120 130 140 150
YQNKLPEILS IDDIKSLLEY CSQDISPEGA RLNAMIHLLY ASGLRVSELV
160 170 180 190 200
SLKLSDILSN KVSREVKKIF SVLGKGNKER IIVINEPAIN SLVKYLVVRD
210 220 230 240 250
NFVNKTKPKN LIYLFPSSAA AGYMTRQNFA ILLKSAALYA GLNPEHISPH
260 270 280 290 300
VLRHSFASHL LEGGADLRVI QELLGHADIS TTQIYTHLQT NHLKKALLHH

PLSKN
Length:305
Mass (Da):34,689
Last modified:May 16, 2006 - v1
Checksum:iB98383395AFBC544
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000087 Genomic DNA. Translation: ABE05083.1.
RefSeqiYP_538172.1. NC_007940.1.

Genome annotation databases

EnsemblBacteriaiABE05083; ABE05083; RBE_1002.
GeneIDi3995364.
KEGGirbe:RBE_1002.
PATRICi17883555. VBIRicBel102610_1135.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000087 Genomic DNA. Translation: ABE05083.1 .
RefSeqi YP_538172.1. NC_007940.1.

3D structure databases

ProteinModelPortali Q1RHT1.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 336407.RBE_1002.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABE05083 ; ABE05083 ; RBE_1002 .
GeneIDi 3995364.
KEGGi rbe:RBE_1002.
PATRICi 17883555. VBIRicBel102610_1135.

Phylogenomic databases

eggNOGi COG4974.
HOGENOMi HOG000045296.
KOi K04763.
OMAi PMGELAI.
OrthoDBi EOG6PZXFP.

Enzyme and pathway databases

BioCyci RBEL336407:GJCY-1030-MONOMER.

Family and domain databases

Gene3Di 1.10.150.130. 1 hit.
1.10.443.10. 1 hit.
HAMAPi MF_01807. Recomb_XerD.
MF_01808. Recomb_XerC.
InterProi IPR011010. DNA_brk_join_enz.
IPR013762. Integrase-like_cat-core.
IPR002104. Integrase_catalytic.
IPR023109. Integrase_recombinase_N.
IPR004107. Integrase_SAM-like_N.
IPR011932. Recomb_XerD.
IPR023009. Tyrosine_recombinase_XerC/XerD.
[Graphical view ]
Pfami PF02899. Phage_int_SAM_1. 1 hit.
PF00589. Phage_integrase. 1 hit.
[Graphical view ]
SUPFAMi SSF56349. SSF56349. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
    Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
    PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RML369-C.

Entry informationi

Entry nameiXERD_RICBR
AccessioniPrimary (citable) accession number: Q1RHT1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 23, 2007
Last sequence update: May 16, 2006
Last modified: October 29, 2014
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Rickettsia bellii strain RML369-C
    Rickettsia bellii (strain RML369-C): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3