Q1RHN8 (RS5_RICBR) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
30S ribosomal protein S5

Gene names

Name:	rpsE
Ordered Locus Names:	RBE_1045

Organism

Rickettsia bellii (strain RML369-C) [Complete proteome] [HAMAP]

Taxonomic identifier

336407 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rickettsiales › Rickettsiaceae › Rickettsieae › Rickettsia › belli group › Rickettsia bellii

Protein attributes

Sequence length	176 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	With S4 and S12 plays an important role in translational accuracy By similarity. HAMAP-Rule MF_01307 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body By similarity. HAMAP-Rule MF_01307
Subunit structure	Part of the 30S ribosomal subunit. Contacts proteins S4 and S8 By similarity.
Domain	The N-terminal domain interacts with the head of the 30S subunit; the C-terminal domain interacts with the body and contacts protein S4. The interaction surface between S4 and S5 is involved in control of translational fidelity. HAMAP-Rule MF_01307
Sequence similarities	Belongs to the ribosomal protein S5P family. Contains 1 S5 DRBM domain.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	small ribosomal subunit Inferred from electronic annotation. Source: InterPro
Molecular_function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 176	176	30S ribosomal protein S5 HAMAP-Rule MF_01307		PRO_0000272397
Regions
	Domain	11 – 74	64	S5 DRBM

Sequences

	Sequence		Length	Mass (Da)
	Q1RHN8 [UniParc]. Last modified May 16, 2006. Version 1. Checksum: 9DF39AD2907FCBBD	FASTA	176	19,027
	10 20 30 40 50 60 MSKVRKNEEA LSEVLVDVNR VTKVVKGGRR FAFSAYVVVG DKAGRVGAGH GKAKEVNEAR 70 80 90 100 110 120 EKAKQAAKKK MMKVSLYQNR TIHHDVIGRS GAAKVVLRRA KAGTGVIAGG SMRAIFDSLG 130 140 150 160 170 VHDIVAKSIG STNVYTMIAA TFDALKKLSS PKSIAARRDK KMNEIFIKSS DIQVNE

References

[1]

"Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens." Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D. PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: RML369-C.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000087 Genomic DNA. Translation: ABE05126.1.
RefSeq	YP_538215.1. NC_007940.1.
3D structure databases
ProteinModelPortal	Q1RHN8.
ModBase	Search...
Protein-protein interaction databases
STRING	336407.RBE_1045.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABE05126; ABE05126; RBE_1045.
GeneID	3995649.
KEGG	rbe:RBE_1045.
PATRIC	17883653. VBIRicBel102610_1182.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0098.
HOGENOM	HOG000072595.
KO	K02988.
OMA	HNVVKAT.
ProtClustDB	PRK00550.
Enzyme and pathway databases
BioCyc	RBEL336407:GJCY-1075-MONOMER.
Family and domain databases
Gene3D	3.30.160.20. 1 hit. 3.30.230.10. 1 hit.
HAMAP	MF_01307_B. Ribosomal_S5_B.
InterPro	IPR014720. dsRNA-bd-like_dom. IPR000851. Ribosomal_S5. IPR005712. Ribosomal_S5_bac-type. IPR005324. Ribosomal_S5_C. IPR020568. Ribosomal_S5_D2-typ_fold. IPR014721. Ribosomal_S5_D2-typ_fold_subgr. IPR013810. Ribosomal_S5_N. IPR018192. Ribosomal_S5_N_CS. [Graphical view]
PANTHER	PTHR13718. PTHR13718. 1 hit.
Pfam	PF00333. Ribosomal_S5. 1 hit. PF03719. Ribosomal_S5_C. 1 hit. [Graphical view]
SUPFAM	SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit.
TIGRFAMs	TIGR01021. rpsE_bact. 1 hit.
PROSITE	PS00585. RIBOSOMAL_S5. 1 hit. PS50881. S5_DSRBD. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RS5_RICBR

Accession

Primary (citable) accession number: Q1RHN8

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 23, 2007
Last sequence update:	May 16, 2006
Last modified:	May 1, 2013
This is version 49 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program