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Q1RHN8

- RS5_RICBR

UniProt

Q1RHN8 - RS5_RICBR

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Protein

30S ribosomal protein S5

Gene

rpsE

Organism
Rickettsia bellii (strain RML369-C)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

With S4 and S12 plays an important role in translational accuracy.UniRule annotation
Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: UniProtKB-HAMAP

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciRBEL336407:GJCY-1075-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S5UniRule annotation
Gene namesi
Name:rpsEUniRule annotation
Ordered Locus Names:RBE_1045
OrganismiRickettsia bellii (strain RML369-C)
Taxonomic identifieri336407 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiabelli group
ProteomesiUP000001951: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. small ribosomal subunit Source: InterPro
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 17617630S ribosomal protein S5PRO_0000272397Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Contacts proteins S4 and S8.UniRule annotation

Protein-protein interaction databases

STRINGi336407.RBE_1045.

Structurei

3D structure databases

ProteinModelPortaliQ1RHN8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini11 – 7464S5 DRBMUniRule annotationAdd
BLAST

Domaini

The N-terminal domain interacts with the head of the 30S subunit; the C-terminal domain interacts with the body and contacts protein S4. The interaction surface between S4 and S5 is involved in control of translational fidelity.

Sequence similaritiesi

Belongs to the ribosomal protein S5P family.UniRule annotation
Contains 1 S5 DRBM domain.UniRule annotation

Phylogenomic databases

eggNOGiCOG0098.
HOGENOMiHOG000072595.
KOiK02988.
OMAiPAHEGTG.
OrthoDBiEOG6FJNM5.

Family and domain databases

Gene3Di3.30.160.20. 1 hit.
3.30.230.10. 1 hit.
HAMAPiMF_01307_B. Ribosomal_S5_B.
InterProiIPR014720. dsRNA-bd_dom.
IPR000851. Ribosomal_S5.
IPR005712. Ribosomal_S5_bac-type.
IPR005324. Ribosomal_S5_C.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR013810. Ribosomal_S5_N.
IPR018192. Ribosomal_S5_N_CS.
[Graphical view]
PANTHERiPTHR13718. PTHR13718. 1 hit.
PfamiPF00333. Ribosomal_S5. 1 hit.
PF03719. Ribosomal_S5_C. 1 hit.
[Graphical view]
SUPFAMiSSF54211. SSF54211. 1 hit.
TIGRFAMsiTIGR01021. rpsE_bact. 1 hit.
PROSITEiPS00585. RIBOSOMAL_S5. 1 hit.
PS50881. S5_DSRBD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q1RHN8-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSKVRKNEEA LSEVLVDVNR VTKVVKGGRR FAFSAYVVVG DKAGRVGAGH
60 70 80 90 100
GKAKEVNEAR EKAKQAAKKK MMKVSLYQNR TIHHDVIGRS GAAKVVLRRA
110 120 130 140 150
KAGTGVIAGG SMRAIFDSLG VHDIVAKSIG STNVYTMIAA TFDALKKLSS
160 170
PKSIAARRDK KMNEIFIKSS DIQVNE
Length:176
Mass (Da):19,027
Last modified:May 16, 2006 - v1
Checksum:i9DF39AD2907FCBBD
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000087 Genomic DNA. Translation: ABE05126.1.
RefSeqiYP_538215.1. NC_007940.1.

Genome annotation databases

EnsemblBacteriaiABE05126; ABE05126; RBE_1045.
GeneIDi3995649.
KEGGirbe:RBE_1045.
PATRICi17883653. VBIRicBel102610_1182.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000087 Genomic DNA. Translation: ABE05126.1 .
RefSeqi YP_538215.1. NC_007940.1.

3D structure databases

ProteinModelPortali Q1RHN8.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 336407.RBE_1045.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABE05126 ; ABE05126 ; RBE_1045 .
GeneIDi 3995649.
KEGGi rbe:RBE_1045.
PATRICi 17883653. VBIRicBel102610_1182.

Phylogenomic databases

eggNOGi COG0098.
HOGENOMi HOG000072595.
KOi K02988.
OMAi PAHEGTG.
OrthoDBi EOG6FJNM5.

Enzyme and pathway databases

BioCyci RBEL336407:GJCY-1075-MONOMER.

Family and domain databases

Gene3Di 3.30.160.20. 1 hit.
3.30.230.10. 1 hit.
HAMAPi MF_01307_B. Ribosomal_S5_B.
InterProi IPR014720. dsRNA-bd_dom.
IPR000851. Ribosomal_S5.
IPR005712. Ribosomal_S5_bac-type.
IPR005324. Ribosomal_S5_C.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR013810. Ribosomal_S5_N.
IPR018192. Ribosomal_S5_N_CS.
[Graphical view ]
PANTHERi PTHR13718. PTHR13718. 1 hit.
Pfami PF00333. Ribosomal_S5. 1 hit.
PF03719. Ribosomal_S5_C. 1 hit.
[Graphical view ]
SUPFAMi SSF54211. SSF54211. 1 hit.
TIGRFAMsi TIGR01021. rpsE_bact. 1 hit.
PROSITEi PS00585. RIBOSOMAL_S5. 1 hit.
PS50881. S5_DSRBD. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
    Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
    PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RML369-C.

Entry informationi

Entry nameiRS5_RICBR
AccessioniPrimary (citable) accession number: Q1RHN8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 23, 2007
Last sequence update: May 16, 2006
Last modified: October 1, 2014
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. Rickettsia bellii strain RML369-C
    Rickettsia bellii (strain RML369-C): entries and gene names
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3