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Q1RHN8

- RS5_RICBR

UniProt

Q1RHN8 - RS5_RICBR

Protein

30S ribosomal protein S5

Gene

rpsE

Organism
Rickettsia bellii (strain RML369-C)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 55 (01 Oct 2014)
      Sequence version 1 (16 May 2006)
      Previous versions | rss
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    Functioni

    With S4 and S12 plays an important role in translational accuracy.UniRule annotation
    Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body.UniRule annotation

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: UniProtKB-HAMAP

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciRBEL336407:GJCY-1075-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    30S ribosomal protein S5UniRule annotation
    Gene namesi
    Name:rpsEUniRule annotation
    Ordered Locus Names:RBE_1045
    OrganismiRickettsia bellii (strain RML369-C)
    Taxonomic identifieri336407 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiabelli group
    ProteomesiUP000001951: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. small ribosomal subunit Source: InterPro

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 17617630S ribosomal protein S5PRO_0000272397Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 30S ribosomal subunit. Contacts proteins S4 and S8.UniRule annotation

    Protein-protein interaction databases

    STRINGi336407.RBE_1045.

    Structurei

    3D structure databases

    ProteinModelPortaliQ1RHN8.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini11 – 7464S5 DRBMUniRule annotationAdd
    BLAST

    Domaini

    The N-terminal domain interacts with the head of the 30S subunit; the C-terminal domain interacts with the body and contacts protein S4. The interaction surface between S4 and S5 is involved in control of translational fidelity.

    Sequence similaritiesi

    Belongs to the ribosomal protein S5P family.UniRule annotation
    Contains 1 S5 DRBM domain.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0098.
    HOGENOMiHOG000072595.
    KOiK02988.
    OMAiPAHEGTG.
    OrthoDBiEOG6FJNM5.

    Family and domain databases

    Gene3Di3.30.160.20. 1 hit.
    3.30.230.10. 1 hit.
    HAMAPiMF_01307_B. Ribosomal_S5_B.
    InterProiIPR014720. dsRNA-bd_dom.
    IPR000851. Ribosomal_S5.
    IPR005712. Ribosomal_S5_bac-type.
    IPR005324. Ribosomal_S5_C.
    IPR020568. Ribosomal_S5_D2-typ_fold.
    IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
    IPR013810. Ribosomal_S5_N.
    IPR018192. Ribosomal_S5_N_CS.
    [Graphical view]
    PANTHERiPTHR13718. PTHR13718. 1 hit.
    PfamiPF00333. Ribosomal_S5. 1 hit.
    PF03719. Ribosomal_S5_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF54211. SSF54211. 1 hit.
    TIGRFAMsiTIGR01021. rpsE_bact. 1 hit.
    PROSITEiPS00585. RIBOSOMAL_S5. 1 hit.
    PS50881. S5_DSRBD. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q1RHN8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSKVRKNEEA LSEVLVDVNR VTKVVKGGRR FAFSAYVVVG DKAGRVGAGH    50
    GKAKEVNEAR EKAKQAAKKK MMKVSLYQNR TIHHDVIGRS GAAKVVLRRA 100
    KAGTGVIAGG SMRAIFDSLG VHDIVAKSIG STNVYTMIAA TFDALKKLSS 150
    PKSIAARRDK KMNEIFIKSS DIQVNE 176
    Length:176
    Mass (Da):19,027
    Last modified:May 16, 2006 - v1
    Checksum:i9DF39AD2907FCBBD
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000087 Genomic DNA. Translation: ABE05126.1.
    RefSeqiYP_538215.1. NC_007940.1.

    Genome annotation databases

    EnsemblBacteriaiABE05126; ABE05126; RBE_1045.
    GeneIDi3995649.
    KEGGirbe:RBE_1045.
    PATRICi17883653. VBIRicBel102610_1182.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000087 Genomic DNA. Translation: ABE05126.1 .
    RefSeqi YP_538215.1. NC_007940.1.

    3D structure databases

    ProteinModelPortali Q1RHN8.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 336407.RBE_1045.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABE05126 ; ABE05126 ; RBE_1045 .
    GeneIDi 3995649.
    KEGGi rbe:RBE_1045.
    PATRICi 17883653. VBIRicBel102610_1182.

    Phylogenomic databases

    eggNOGi COG0098.
    HOGENOMi HOG000072595.
    KOi K02988.
    OMAi PAHEGTG.
    OrthoDBi EOG6FJNM5.

    Enzyme and pathway databases

    BioCyci RBEL336407:GJCY-1075-MONOMER.

    Family and domain databases

    Gene3Di 3.30.160.20. 1 hit.
    3.30.230.10. 1 hit.
    HAMAPi MF_01307_B. Ribosomal_S5_B.
    InterProi IPR014720. dsRNA-bd_dom.
    IPR000851. Ribosomal_S5.
    IPR005712. Ribosomal_S5_bac-type.
    IPR005324. Ribosomal_S5_C.
    IPR020568. Ribosomal_S5_D2-typ_fold.
    IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
    IPR013810. Ribosomal_S5_N.
    IPR018192. Ribosomal_S5_N_CS.
    [Graphical view ]
    PANTHERi PTHR13718. PTHR13718. 1 hit.
    Pfami PF00333. Ribosomal_S5. 1 hit.
    PF03719. Ribosomal_S5_C. 1 hit.
    [Graphical view ]
    SUPFAMi SSF54211. SSF54211. 1 hit.
    TIGRFAMsi TIGR01021. rpsE_bact. 1 hit.
    PROSITEi PS00585. RIBOSOMAL_S5. 1 hit.
    PS50881. S5_DSRBD. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
      Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
      PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: RML369-C.

    Entry informationi

    Entry nameiRS5_RICBR
    AccessioniPrimary (citable) accession number: Q1RHN8
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 23, 2007
    Last sequence update: May 16, 2006
    Last modified: October 1, 2014
    This is version 55 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Ribosomal proteins
      Ribosomal proteins families and list of entries
    2. Rickettsia bellii strain RML369-C
      Rickettsia bellii (strain RML369-C): entries and gene names
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3