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Q1RHD0

- RPOB_RICBR

UniProt

Q1RHD0 - RPOB_RICBR

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Protein

DNA-directed RNA polymerase subunit beta

Gene
rpoB, RBE_1153
Organism
Rickettsia bellii (strain RML369-C)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates By similarity.UniRule annotation

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-HAMAP
  2. DNA-directed RNA polymerase activity Source: UniProtKB-HAMAP
  3. ribonucleoside binding Source: InterPro

GO - Biological processi

  1. transcription, DNA-templated Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Nucleotidyltransferase, Transferase

Keywords - Biological processi

Transcription

Enzyme and pathway databases

BioCyciRBEL336407:GJCY-1187-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
Short name:
RNAP subunit beta
Alternative name(s):
RNA polymerase subunit beta
Transcriptase subunit beta
Gene namesi
Name:rpoB
Ordered Locus Names:RBE_1153
OrganismiRickettsia bellii (strain RML369-C)
Taxonomic identifieri336407 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiabelli group
ProteomesiUP000001951: Chromosome

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymerase

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 13721372DNA-directed RNA polymerase subunit betaUniRule annotationPRO_0000272393Add
BLAST

Interactioni

Subunit structurei

The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription By similarity.

Protein-protein interaction databases

STRINGi336407.RBE_1153.

Structurei

3D structure databases

ProteinModelPortaliQ1RHD0.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0085.
HOGENOMiHOG000218612.
KOiK03043.
OMAiICPANME.
OrthoDBiEOG6M9DS6.

Family and domain databases

Gene3Di2.30.150.10. 1 hit.
2.40.270.10. 2 hits.
2.40.50.150. 2 hits.
3.90.1110.10. 2 hits.
HAMAPiMF_01321. RNApol_bact_RpoB.
InterProiIPR010243. DNA-dir_RNA_pol_bsu.
IPR019462. DNA-dir_RNA_pol_bsu_external_1.
IPR015712. DNA-dir_RNA_pol_su2.
IPR007120. DNA-dir_RNA_pol_su2_6.
IPR007121. RNA_pol_bsu_CS.
IPR007644. RNA_pol_bsu_protrusion.
IPR007642. RNA_pol_Rpb2_2.
IPR007645. RNA_pol_Rpb2_3.
IPR007641. RNA_pol_Rpb2_7.
IPR014724. RNA_pol_RPB2_OB-fold.
[Graphical view]
PANTHERiPTHR20856. PTHR20856. 1 hit.
PfamiPF04563. RNA_pol_Rpb2_1. 1 hit.
PF04561. RNA_pol_Rpb2_2. 2 hits.
PF04565. RNA_pol_Rpb2_3. 1 hit.
PF10385. RNA_pol_Rpb2_45. 1 hit.
PF00562. RNA_pol_Rpb2_6. 1 hit.
PF04560. RNA_pol_Rpb2_7. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02013. rpoB. 1 hit.
PROSITEiPS01166. RNA_POL_BETA. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q1RHD0-1 [UniParc]FASTAAdd to Basket

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MVSLRDNIEV QPLSHNKRVR KNFGHINLVA DIPNLIEIQK NSYEKNFLQL     50
DTKDSERKNK GLQSILNSIF PISDPSNIAN LEFVKYEFDT PKYDVEECTQ 100
RSLSYDSALK VTLRLSIWDI DEDTGSREIK GIKEQQVYMG NIPLMTKNGT 150
FIINGTERVV VSQMHRSPGV FFYHDEGKVH SSRKLLYSAR VIPYRGSWLD 200
LEFDAKDIIY FRIDRKRKLY ATTLLKAIGM STEEIIKFYY DSVNYKVVKN 250
KGWAVKFMPS HITAHRLTSD LIDADTGNVL LKAGQKITPR LAKKYAGEGL 300
NNILVSHKAL IGKYLSEDLK DPESDEILAK IGEMITVELL SVISDLKIKN 350
ISVLVINPQS GPYIRNTLFS DKNQDRESAL FDIFRVLRPG EPANIEAAES 400
LFYNLFFDPE RYDLSEVGRI KMNSRLELNI SDETTVLTTD DIKNILRVLV 450
ELKDRKGIID DIDHLGNRRV RSVGELIENQ FRIGLVRMEK SVVERMSAGD 500
IDTVMPHDLV NSKILVSVVK EFFSTSQLSQ FMDQTNPLSE ITHKRRLSAL 550
GPGGLSRDRA GFEVRDVHPT HYGRICPIET PEGQNIGLIN SMATYARINK 600
HGFIESPYRK VKDGHVTDEV VYLSAIEEGK YKIGQANSKV DKDGILQGEF 650
INCRVEGGNF VMVEPHEVDF IDVTPMQVVS VAASLIPFLE NDDANRALMG 700
SNMQRQAVPL IKTDAPFVGT GVEGVVAKDS GASVLALNDG IVEQVDSNRI 750
VIRAIAQKTE SAPSVDIYNL LKFQKSNHNT CINQKPLVKV GHYVKKNDII 800
ADGPSTDNGE IALGRNVLVA FLPWNGYNFE DSILISERIV KEDVFTSVHI 850
EEFEVIARDT RLGPEEITRD IPNVSEEALR HLDEVGIIYV GAEVKAGDIL 900
VGKVTPKSES PITPEEKLLR AIFGEKAFDV KDSSLHVPSG VSGTVVEVRV 950
FSRRGVEKDQ RAIAIEKQQI EKLAKDRDDE LEIIEHFVFS WLEKLLVGQV 1000
SINGPKTVKT GQTITSEILK GLSKGQLWQF TVEDANVMNE IEQLKGHYDG 1050
KKEALNKRFA TKVEKLQSGD DLPQGALKVV KVFIATKHKL QPGDKMAGRH 1100
GNKGVISRIV PEEDMPFLED GTVVDIVLNP LGLPSRMNIG QVLETHLGWA 1150
SVNLAKKIAG LVEEHKTKHA SIEKIKKFLI ELYGENINHI LEKSDEEIIS 1200
FCNEAAKGVY FATPVFDGAK VEDVKDMLRL AGQDLSGQVK LIDGRTGEYF 1250
DRLVTVGQKY LLKLHHLVDN KIHSRSIGPY SLVTQQPLGG KSHFGGQRFG 1300
EMECWALQAY GAAYTLQEML TVKSDDVNGR IKIYDSIVRG ENNFESGIPE 1350
SFNVMIKEFR SLCLNVKLEV TS 1372
Length:1,372
Mass (Da):153,845
Last modified:May 16, 2006 - v1
Checksum:i72431578B8F20B58
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000087 Genomic DNA. Translation: ABE05234.1.
RefSeqiWP_011477812.1. NC_007940.1.
YP_538323.1. NC_007940.1.

Genome annotation databases

EnsemblBacteriaiABE05234; ABE05234; RBE_1153.
GeneIDi3995110.
KEGGirbe:RBE_1153.
PATRICi17883903. VBIRicBel102610_1303.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000087 Genomic DNA. Translation: ABE05234.1 .
RefSeqi WP_011477812.1. NC_007940.1.
YP_538323.1. NC_007940.1.

3D structure databases

ProteinModelPortali Q1RHD0.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 336407.RBE_1153.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABE05234 ; ABE05234 ; RBE_1153 .
GeneIDi 3995110.
KEGGi rbe:RBE_1153.
PATRICi 17883903. VBIRicBel102610_1303.

Phylogenomic databases

eggNOGi COG0085.
HOGENOMi HOG000218612.
KOi K03043.
OMAi ICPANME.
OrthoDBi EOG6M9DS6.

Enzyme and pathway databases

BioCyci RBEL336407:GJCY-1187-MONOMER.

Family and domain databases

Gene3Di 2.30.150.10. 1 hit.
2.40.270.10. 2 hits.
2.40.50.150. 2 hits.
3.90.1110.10. 2 hits.
HAMAPi MF_01321. RNApol_bact_RpoB.
InterProi IPR010243. DNA-dir_RNA_pol_bsu.
IPR019462. DNA-dir_RNA_pol_bsu_external_1.
IPR015712. DNA-dir_RNA_pol_su2.
IPR007120. DNA-dir_RNA_pol_su2_6.
IPR007121. RNA_pol_bsu_CS.
IPR007644. RNA_pol_bsu_protrusion.
IPR007642. RNA_pol_Rpb2_2.
IPR007645. RNA_pol_Rpb2_3.
IPR007641. RNA_pol_Rpb2_7.
IPR014724. RNA_pol_RPB2_OB-fold.
[Graphical view ]
PANTHERi PTHR20856. PTHR20856. 1 hit.
Pfami PF04563. RNA_pol_Rpb2_1. 1 hit.
PF04561. RNA_pol_Rpb2_2. 2 hits.
PF04565. RNA_pol_Rpb2_3. 1 hit.
PF10385. RNA_pol_Rpb2_45. 1 hit.
PF00562. RNA_pol_Rpb2_6. 1 hit.
PF04560. RNA_pol_Rpb2_7. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR02013. rpoB. 1 hit.
PROSITEi PS01166. RNA_POL_BETA. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
    Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
    PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RML369-C.

Entry informationi

Entry nameiRPOB_RICBR
AccessioniPrimary (citable) accession number: Q1RHD0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 23, 2007
Last sequence update: May 16, 2006
Last modified: September 3, 2014
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Rickettsia bellii strain RML369-C
    Rickettsia bellii (strain RML369-C): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi