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Q1RHB5

- DHSC_RICBR

UniProt

Q1RHB5 - DHSC_RICBR

Protein

Succinate dehydrogenase cytochrome b556 subunit

Gene

sdhC

Organism
Rickettsia bellii (strain RML369-C)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
  1. Functioni

    Membrane-anchoring subunit of succinate dehydrogenase (SDH).By similarity

    Cofactori

    Heme group. The heme is bound between the two transmembrane subunits By similarity.By similarity

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi84 – 841Iron (heme axial ligand); shared with second transmembrane subunitBy similarity

    GO - Molecular functioni

    1. electron carrier activity Source: InterPro
    2. metal ion binding Source: UniProtKB-KW
    3. succinate dehydrogenase activity Source: InterPro

    GO - Biological processi

    1. tricarboxylic acid cycle Source: UniProtKB-UniPathway

    Keywords - Biological processi

    Electron transport, Transport, Tricarboxylic acid cycle

    Keywords - Ligandi

    Heme, Iron, Metal-binding

    Enzyme and pathway databases

    BioCyciRBEL336407:GJCY-1203-MONOMER.
    UniPathwayiUPA00223.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Succinate dehydrogenase cytochrome b556 subunit
    Short name:
    Cytochrome b-556
    Gene namesi
    Name:sdhC
    Ordered Locus Names:RBE_1168
    OrganismiRickettsia bellii (strain RML369-C)
    Taxonomic identifieri336407 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiabelli group
    ProteomesiUP000001951: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. integral component of membrane Source: UniProtKB-KW
    2. plasma membrane Source: UniProtKB-SubCell
    3. succinate dehydrogenase complex Source: InterPro

    Keywords - Cellular componenti

    Cell inner membrane, Cell membrane, Membrane

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 125125Succinate dehydrogenase cytochrome b556 subunitPRO_0000281050Add
    BLAST

    Interactioni

    Subunit structurei

    Part of an enzyme complex containing four subunits: a flavoprotein, an iron-sulfur protein, plus two membrane-anchoring proteins, SdhC and SdhD. The complex can form homotrimers By similarity.By similarity

    Protein-protein interaction databases

    STRINGi336407.RBE_1168.

    Structurei

    3D structure databases

    ProteinModelPortaliQ1RHB5.
    ModBaseiSearch...
    MobiDBiSearch...

    Topological domain

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Topological domaini1 – 2929CytoplasmicBy similarityAdd
    BLAST
    Topological domaini56 – 6813PeriplasmicBy similarityAdd
    BLAST
    Topological domaini90 – 10415CytoplasmicBy similarityAdd
    BLAST

    Transmembrane

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transmembranei30 – 5526HelicalBy similarityAdd
    BLAST
    Transmembranei69 – 8921HelicalBy similarityAdd
    BLAST
    Transmembranei105 – 12521HelicalBy similarityAdd
    BLAST

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the cytochrome b560 family.Curated

    Keywords - Domaini

    Transmembrane, Transmembrane helix

    Phylogenomic databases

    eggNOGiCOG2009.
    HOGENOMiHOG000160253.
    KOiK00241.
    OMAiWALMHHM.
    OrthoDBiEOG647V36.

    Family and domain databases

    InterProiIPR018495. Succ_DH_cyt_bsu_CS.
    IPR014314. Succ_DH_cytb556.
    IPR014361. Succ_DH_cytb560.
    IPR000701. Succ_DH_Fumarate_Rdtase_TM-su.
    [Graphical view]
    PfamiPF01127. Sdh_cyt. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000178. SDH_cyt_b560. 1 hit.
    TIGRFAMsiTIGR02970. succ_dehyd_cytB. 1 hit.
    PROSITEiPS01000. SDH_CYT_1. 1 hit.
    PS01001. SDH_CYT_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q1RHB5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTKTKQEIYN KRPTSPHLTI YKPQISSTLS ILHRMTGVAL FFAVSILAWW    50
    FILSKFDSNY IKLANCCCII KICLILTSFA WFYHLCNGIR HLFWDIGLGF 100
    SIKAVNLTGW SVVICSVLFT ILLWV 125
    Length:125
    Mass (Da):14,408
    Last modified:May 16, 2006 - v1
    Checksum:iA9FD375B6905EF3E
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000087 Genomic DNA. Translation: ABE05249.1.
    RefSeqiYP_538338.1. NC_007940.1.

    Genome annotation databases

    EnsemblBacteriaiABE05249; ABE05249; RBE_1168.
    GeneIDi3995946.
    KEGGirbe:RBE_1168.
    PATRICi17883935. VBIRicBel102610_1318.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000087 Genomic DNA. Translation: ABE05249.1 .
    RefSeqi YP_538338.1. NC_007940.1.

    3D structure databases

    ProteinModelPortali Q1RHB5.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 336407.RBE_1168.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABE05249 ; ABE05249 ; RBE_1168 .
    GeneIDi 3995946.
    KEGGi rbe:RBE_1168.
    PATRICi 17883935. VBIRicBel102610_1318.

    Phylogenomic databases

    eggNOGi COG2009.
    HOGENOMi HOG000160253.
    KOi K00241.
    OMAi WALMHHM.
    OrthoDBi EOG647V36.

    Enzyme and pathway databases

    UniPathwayi UPA00223 .
    BioCyci RBEL336407:GJCY-1203-MONOMER.

    Family and domain databases

    InterProi IPR018495. Succ_DH_cyt_bsu_CS.
    IPR014314. Succ_DH_cytb556.
    IPR014361. Succ_DH_cytb560.
    IPR000701. Succ_DH_Fumarate_Rdtase_TM-su.
    [Graphical view ]
    Pfami PF01127. Sdh_cyt. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000178. SDH_cyt_b560. 1 hit.
    TIGRFAMsi TIGR02970. succ_dehyd_cytB. 1 hit.
    PROSITEi PS01000. SDH_CYT_1. 1 hit.
    PS01001. SDH_CYT_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
      Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
      PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: RML369-C.

    Entry informationi

    Entry nameiDHSC_RICBR
    AccessioniPrimary (citable) accession number: Q1RHB5
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: March 20, 2007
    Last sequence update: May 16, 2006
    Last modified: October 1, 2014
    This is version 61 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    2. Rickettsia bellii strain RML369-C
      Rickettsia bellii (strain RML369-C): entries and gene names
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3