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Q1RHB5 (DHSC_RICBR) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 60. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Succinate dehydrogenase cytochrome b556 subunit

Short name=Cytochrome b-556
Gene names
Name:sdhC
Ordered Locus Names:RBE_1168
OrganismRickettsia bellii (strain RML369-C) [Complete proteome] [HAMAP]
Taxonomic identifier336407 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiabelli group

Protein attributes

Sequence length125 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Membrane-anchoring subunit of succinate dehydrogenase (SDH) By similarity.

Cofactor

Heme group. The heme is bound between the two transmembrane subunits By similarity.

Pathway

Carbohydrate metabolism; tricarboxylic acid cycle.

Subunit structure

Part of an enzyme complex containing four subunits: a flavoprotein, an iron-sulfur protein, plus two membrane-anchoring proteins, SdhC and SdhD. The complex can form homotrimers By similarity.

Subcellular location

Cell inner membrane; Multi-pass membrane protein.

Sequence similarities

Belongs to the cytochrome b560 family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 125125Succinate dehydrogenase cytochrome b556 subunit
PRO_0000281050

Regions

Topological domain1 – 2929Cytoplasmic By similarity
Transmembrane30 – 5526Helical; By similarity
Topological domain56 – 6813Periplasmic By similarity
Transmembrane69 – 8921Helical; By similarity
Topological domain90 – 10415Cytoplasmic By similarity
Transmembrane105 – 12521Helical; By similarity

Sites

Metal binding841Iron (heme axial ligand); shared with second transmembrane subunit By similarity

Sequences

Sequence LengthMass (Da)Tools
Q1RHB5 [UniParc].

Last modified May 16, 2006. Version 1.
Checksum: A9FD375B6905EF3E

FASTA12514,408
        10         20         30         40         50         60 
MTKTKQEIYN KRPTSPHLTI YKPQISSTLS ILHRMTGVAL FFAVSILAWW FILSKFDSNY 

        70         80         90        100        110        120 
IKLANCCCII KICLILTSFA WFYHLCNGIR HLFWDIGLGF SIKAVNLTGW SVVICSVLFT 


ILLWV 

« Hide

References

[1]"Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: RML369-C.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000087 Genomic DNA. Translation: ABE05249.1.
RefSeqYP_538338.1. NC_007940.1.

3D structure databases

ProteinModelPortalQ1RHB5.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING336407.RBE_1168.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABE05249; ABE05249; RBE_1168.
GeneID3995946.
KEGGrbe:RBE_1168.
PATRIC17883935. VBIRicBel102610_1318.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2009.
HOGENOMHOG000160253.
KOK00241.
OMAWALMHHM.
OrthoDBEOG647V36.

Enzyme and pathway databases

BioCycRBEL336407:GJCY-1203-MONOMER.
UniPathwayUPA00223.

Family and domain databases

InterProIPR018495. Succ_DH_cyt_bsu_CS.
IPR014314. Succ_DH_cytb556.
IPR014361. Succ_DH_cytb560.
IPR000701. Succ_DH_Fumarate_Rdtase_TM-su.
[Graphical view]
PfamPF01127. Sdh_cyt. 1 hit.
[Graphical view]
PIRSFPIRSF000178. SDH_cyt_b560. 1 hit.
TIGRFAMsTIGR02970. succ_dehyd_cytB. 1 hit.
PROSITEPS01000. SDH_CYT_1. 1 hit.
PS01001. SDH_CYT_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameDHSC_RICBR
AccessionPrimary (citable) accession number: Q1RHB5
Entry history
Integrated into UniProtKB/Swiss-Prot: March 20, 2007
Last sequence update: May 16, 2006
Last modified: May 14, 2014
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rickettsia bellii strain RML369-C

Rickettsia bellii (strain RML369-C): entries and gene names

PATHWAY comments

Index of metabolic and biosynthesis pathways