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Q1RH88

- SODF_RICBR

UniProt

Q1RH88 - SODF_RICBR

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Protein

Superoxide dismutase [Mn/Fe]

Gene

sodB

Organism
Rickettsia bellii (strain RML369-C)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.

Cofactori

Mn2+By similarity, Fe2+By similarityNote: Binds 1 Mn(2+) or Fe(2+) ion per subunit.By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi38 – 381Manganese or ironBy similarity
Metal bindingi90 – 901Manganese or ironBy similarity
Metal bindingi172 – 1721Manganese or ironBy similarity
Metal bindingi176 – 1761Manganese or ironBy similarity

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. superoxide dismutase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Ligandi

Iron, Manganese, Metal-binding

Enzyme and pathway databases

BioCyciRBEL336407:GJCY-1230-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutase [Mn/Fe] (EC:1.15.1.1)
Gene namesi
Name:sodB
Ordered Locus Names:RBE_1195
OrganismiRickettsia bellii (strain RML369-C)
Taxonomic identifieri336407 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiabelli group
ProteomesiUP000001951: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 209209Superoxide dismutase [Mn/Fe]PRO_0000286501Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi336407.RBE_1195.

Structurei

3D structure databases

ProteinModelPortaliQ1RH88.
SMRiQ1RH88. Positions 14-208.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0605.
HOGENOMiHOG000013584.
KOiK04564.
OMAiWTWLVKG.
OrthoDBiEOG63NMNT.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiPS00088. SOD_MN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q1RH88-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTYCDKSNQT SYPFVLPNLP YEKESFKPHF TAETFEYHHG KHHNAYVQNL
60 70 80 90 100
NNLLKDKEEL QKKNLEEIID WSSQNQNIAI FNNAAQVWNH TFFWHSIKPN
110 120 130 140 150
GGGKPSGKIL KQINEDFGSF EEFCEQFKAE ATGQFGSGWA WLVYHNNRLQ
160 170 180 190 200
IVKTANAGTP IANGMQPLLA CDVWEHAYYI DYRNKRPDYV DIFIKHMINW

EFVENNLTK
Length:209
Mass (Da):24,496
Last modified:May 16, 2006 - v1
Checksum:i95241EDC5FE971FD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000087 Genomic DNA. Translation: ABE05276.1.
RefSeqiYP_538365.1. NC_007940.1.

Genome annotation databases

EnsemblBacteriaiABE05276; ABE05276; RBE_1195.
GeneIDi3995281.
KEGGirbe:RBE_1195.
PATRICi17883995. VBIRicBel102610_1348.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000087 Genomic DNA. Translation: ABE05276.1 .
RefSeqi YP_538365.1. NC_007940.1.

3D structure databases

ProteinModelPortali Q1RH88.
SMRi Q1RH88. Positions 14-208.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 336407.RBE_1195.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABE05276 ; ABE05276 ; RBE_1195 .
GeneIDi 3995281.
KEGGi rbe:RBE_1195.
PATRICi 17883995. VBIRicBel102610_1348.

Phylogenomic databases

eggNOGi COG0605.
HOGENOMi HOG000013584.
KOi K04564.
OMAi WTWLVKG.
OrthoDBi EOG63NMNT.

Enzyme and pathway databases

BioCyci RBEL336407:GJCY-1230-MONOMER.

Family and domain databases

InterProi IPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view ]
PANTHERi PTHR11404. PTHR11404. 1 hit.
Pfami PF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view ]
PIRSFi PIRSF000349. SODismutase. 1 hit.
PRINTSi PR01703. MNSODISMTASE.
SUPFAMi SSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEi PS00088. SOD_MN. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
    Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
    PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RML369-C.

Entry informationi

Entry nameiSODF_RICBR
AccessioniPrimary (citable) accession number: Q1RH88
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 15, 2007
Last sequence update: May 16, 2006
Last modified: November 26, 2014
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Rickettsia bellii strain RML369-C
    Rickettsia bellii (strain RML369-C): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3