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Q1RH55

- SUCC_RICBR

UniProt

Q1RH55 - SUCC_RICBR

Protein

Succinyl-CoA ligase [ADP-forming] subunit beta

Gene

sucC

Organism
Rickettsia bellii (strain RML369-C)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 60 (01 Oct 2014)
      Sequence version 1 (16 May 2006)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + succinate + CoA = ADP + phosphate + succinyl-CoA.UniRule annotation

    Cofactori

    Binds 1 magnesium or manganese ion per subunit.UniRule annotation

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi197 – 1971Magnesium or manganeseUniRule annotation
    Metal bindingi199 – 1991Magnesium or manganeseUniRule annotation

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi35 – 10874ATPUniRule annotationAdd
    BLAST

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-HAMAP
    2. magnesium ion binding Source: UniProtKB-HAMAP
    3. manganese ion binding Source: UniProtKB-HAMAP
    4. succinate-CoA ligase (ADP-forming) activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. tricarboxylic acid cycle Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ligase

    Keywords - Biological processi

    Tricarboxylic acid cycle

    Keywords - Ligandi

    ATP-binding, Magnesium, Manganese, Metal-binding, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciRBEL336407:GJCY-1265-MONOMER.
    UniPathwayiUPA00223; UER00999.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Succinyl-CoA ligase [ADP-forming] subunit betaUniRule annotation (EC:6.2.1.5UniRule annotation)
    Alternative name(s):
    Succinyl-CoA synthetase subunit betaUniRule annotation
    Short name:
    SCS-betaUniRule annotation
    Gene namesi
    Name:sucCUniRule annotation
    Ordered Locus Names:RBE_1228
    OrganismiRickettsia bellii (strain RML369-C)
    Taxonomic identifieri336407 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiabelli group
    ProteomesiUP000001951: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 385385Succinyl-CoA ligase [ADP-forming] subunit betaPRO_0000277952Add
    BLAST

    Proteomic databases

    PRIDEiQ1RH55.

    Interactioni

    Subunit structurei

    Heterotetramer of two alpha and two beta subunits.UniRule annotation

    Protein-protein interaction databases

    STRINGi336407.RBE_1228.

    Structurei

    3D structure databases

    ProteinModelPortaliQ1RH55.
    SMRiQ1RH55. Positions 1-385.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini9 – 244236ATP-graspUniRule annotationAdd
    BLAST

    Sequence similaritiesi

    Belongs to the succinate/malate CoA ligase beta subunit family.UniRule annotation
    Contains 1 ATP-grasp domain.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0045.
    HOGENOMiHOG000007059.
    KOiK01903.
    OMAiKVVFMAS.
    OrthoDBiEOG644ZT0.

    Family and domain databases

    Gene3Di3.30.1490.20. 1 hit.
    3.30.470.20. 1 hit.
    3.40.50.261. 1 hit.
    HAMAPiMF_00558. Succ_CoA_beta.
    InterProiIPR011761. ATP-grasp.
    IPR013650. ATP-grasp_succ-CoA_synth-type.
    IPR013815. ATP_grasp_subdomain_1.
    IPR013816. ATP_grasp_subdomain_2.
    IPR005811. CoA_ligase.
    IPR017866. Succ-CoA_synthase_bsu_CS.
    IPR005809. Succ_CoA_synthase_bsu.
    IPR016102. Succinyl-CoA_synth-like.
    [Graphical view]
    PANTHERiPTHR11815. PTHR11815. 1 hit.
    PfamiPF08442. ATP-grasp_2. 1 hit.
    PF00549. Ligase_CoA. 1 hit.
    [Graphical view]
    PIRSFiPIRSF001554. SucCS_beta. 1 hit.
    SUPFAMiSSF52210. SSF52210. 1 hit.
    TIGRFAMsiTIGR01016. sucCoAbeta. 1 hit.
    PROSITEiPS50975. ATP_GRASP. 1 hit.
    PS01217. SUCCINYL_COA_LIG_3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q1RH55-1 [UniParc]FASTAAdd to Basket

    « Hide

    MNIHEYQAKE ILRKYGVPTS TGVVVTKTES INAAIDELNT KVYVVKAQIH    50
    AGGRGKAGGV KVVKSKEEAK KVAHDMFGIN LVTHQTGPQG QKVNRLYIES 100
    GCDILKEYYF SVVFDRSASC ITFIASTEGG VDIEEVAEKT PEKIIKFSVD 150
    PATGLQNFHA QGIAYELGFK DHQVKQMKEI VKATYKAFIE TDAAQIEINP 200
    LIVNKEGNLL ALDAKFTFDD NGLFKHPEIM ALRDQDEEDP LETRAADAGL 250
    SYVKMDGSIG CMVNGAGLAM ATMDIIKLYG ATPANFLDVG GGADRERVKE 300
    ALKIILSDKE VKGILVNIFG GIMRCDIIAE GIIAAAKDIG IKVPLVVRLA 350
    GTNVEKGKEI LSNSGLEIIP AHDLADAASK IVEAI 385
    Length:385
    Mass (Da):41,594
    Last modified:May 16, 2006 - v1
    Checksum:i6A29DEB9E686CA57
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000087 Genomic DNA. Translation: ABE05309.1.
    RefSeqiWP_011477884.1. NC_007940.1.
    YP_538398.1. NC_007940.1.

    Genome annotation databases

    EnsemblBacteriaiABE05309; ABE05309; RBE_1228.
    GeneIDi3995496.
    KEGGirbe:RBE_1228.
    PATRICi17884076. VBIRicBel102610_1387.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000087 Genomic DNA. Translation: ABE05309.1 .
    RefSeqi WP_011477884.1. NC_007940.1.
    YP_538398.1. NC_007940.1.

    3D structure databases

    ProteinModelPortali Q1RH55.
    SMRi Q1RH55. Positions 1-385.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 336407.RBE_1228.

    Proteomic databases

    PRIDEi Q1RH55.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABE05309 ; ABE05309 ; RBE_1228 .
    GeneIDi 3995496.
    KEGGi rbe:RBE_1228.
    PATRICi 17884076. VBIRicBel102610_1387.

    Phylogenomic databases

    eggNOGi COG0045.
    HOGENOMi HOG000007059.
    KOi K01903.
    OMAi KVVFMAS.
    OrthoDBi EOG644ZT0.

    Enzyme and pathway databases

    UniPathwayi UPA00223 ; UER00999 .
    BioCyci RBEL336407:GJCY-1265-MONOMER.

    Family and domain databases

    Gene3Di 3.30.1490.20. 1 hit.
    3.30.470.20. 1 hit.
    3.40.50.261. 1 hit.
    HAMAPi MF_00558. Succ_CoA_beta.
    InterProi IPR011761. ATP-grasp.
    IPR013650. ATP-grasp_succ-CoA_synth-type.
    IPR013815. ATP_grasp_subdomain_1.
    IPR013816. ATP_grasp_subdomain_2.
    IPR005811. CoA_ligase.
    IPR017866. Succ-CoA_synthase_bsu_CS.
    IPR005809. Succ_CoA_synthase_bsu.
    IPR016102. Succinyl-CoA_synth-like.
    [Graphical view ]
    PANTHERi PTHR11815. PTHR11815. 1 hit.
    Pfami PF08442. ATP-grasp_2. 1 hit.
    PF00549. Ligase_CoA. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF001554. SucCS_beta. 1 hit.
    SUPFAMi SSF52210. SSF52210. 1 hit.
    TIGRFAMsi TIGR01016. sucCoAbeta. 1 hit.
    PROSITEi PS50975. ATP_GRASP. 1 hit.
    PS01217. SUCCINYL_COA_LIG_3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
      Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
      PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: RML369-C.

    Entry informationi

    Entry nameiSUCC_RICBR
    AccessioniPrimary (citable) accession number: Q1RH55
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 20, 2007
    Last sequence update: May 16, 2006
    Last modified: October 1, 2014
    This is version 60 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    2. Rickettsia bellii strain RML369-C
      Rickettsia bellii (strain RML369-C): entries and gene names
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3