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Q1RGX3

- YBEY_RICBR

UniProt

Q1RGX3 - YBEY_RICBR

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Protein

Endoribonuclease YbeY

Gene

ybeY

Organism
Rickettsia bellii (strain RML369-C)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.UniRule annotation

Cofactori

Binds 1 zinc ion.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi143 – 1431Zinc; catalyticUniRule annotation
Metal bindingi147 – 1471Zinc; catalyticUniRule annotation
Metal bindingi153 – 1531Zinc; catalyticUniRule annotation

GO - Molecular functioni

  1. endoribonuclease activity Source: UniProtKB-HAMAP
  2. metalloendopeptidase activity Source: InterPro
  3. zinc ion binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. rRNA processing Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Endonuclease, Hydrolase, Nuclease

Keywords - Biological processi

Ribosome biogenesis, rRNA processing

Keywords - Ligandi

Metal-binding, Zinc

Enzyme and pathway databases

BioCyciRBEL336407:GJCY-1348-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Endoribonuclease YbeYUniRule annotation (EC:3.1.-.-UniRule annotation)
Gene namesi
Name:ybeYUniRule annotation
Ordered Locus Names:RBE_1310
OrganismiRickettsia bellii (strain RML369-C)
Taxonomic identifieri336407 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiabelli group
ProteomesiUP000001951: Chromosome

Subcellular locationi

Cytoplasm UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 183183Endoribonuclease YbeYPRO_0000277991Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi336407.RBE_1310.

Structurei

3D structure databases

ProteinModelPortaliQ1RGX3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the endoribonuclease YbeY family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0319.
HOGENOMiHOG000132869.
KOiK07042.
OMAiDIIIARE.
OrthoDBiEOG680X6D.

Family and domain databases

Gene3Di3.40.390.30. 1 hit.
HAMAPiMF_00009. Endoribonucl_YbeY.
InterProiIPR023091. MetalPrtase_cat_dom_prd.
IPR002036. YbeY.
IPR020549. YbeY_CS.
[Graphical view]
PfamiPF02130. UPF0054. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00043. TIGR00043. 1 hit.
PROSITEiPS01306. UPF0054. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q1RGX3 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MINVEIIKNY SKWREHKQIN KALIKKITQK TLSQFDNFSE IKQFELSILL
60 70 80 90 100
TNNEEILTLN KQFRNIEKAT NVLSFPANEL NWQDLRFSGN EIASSNKPII
110 120 130 140 150
LENLGDSDYM HLGDIAFCHD VIYNESYEQQ KTFENHFIHL LIHSILHLIG
160 170 180
FDHQNDTETK IMENLEIEIL AHFGISSPYL LIK
Length:183
Mass (Da):21,475
Last modified:May 16, 2006 - v1
Checksum:iDF9FD5A17512A8A1
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000087 Genomic DNA. Translation: ABE05391.1.
RefSeqiYP_538480.1. NC_007940.1.

Genome annotation databases

EnsemblBacteriaiABE05391; ABE05391; RBE_1310.
GeneIDi3995527.
KEGGirbe:RBE_1310.
PATRICi17884256. VBIRicBel102610_1476.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000087 Genomic DNA. Translation: ABE05391.1 .
RefSeqi YP_538480.1. NC_007940.1.

3D structure databases

ProteinModelPortali Q1RGX3.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 336407.RBE_1310.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABE05391 ; ABE05391 ; RBE_1310 .
GeneIDi 3995527.
KEGGi rbe:RBE_1310.
PATRICi 17884256. VBIRicBel102610_1476.

Phylogenomic databases

eggNOGi COG0319.
HOGENOMi HOG000132869.
KOi K07042.
OMAi DIIIARE.
OrthoDBi EOG680X6D.

Enzyme and pathway databases

BioCyci RBEL336407:GJCY-1348-MONOMER.

Family and domain databases

Gene3Di 3.40.390.30. 1 hit.
HAMAPi MF_00009. Endoribonucl_YbeY.
InterProi IPR023091. MetalPrtase_cat_dom_prd.
IPR002036. YbeY.
IPR020549. YbeY_CS.
[Graphical view ]
Pfami PF02130. UPF0054. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR00043. TIGR00043. 1 hit.
PROSITEi PS01306. UPF0054. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
    Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
    PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RML369-C.

Entry informationi

Entry nameiYBEY_RICBR
AccessioniPrimary (citable) accession number: Q1RGX3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 20, 2007
Last sequence update: May 16, 2006
Last modified: October 29, 2014
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Rickettsia bellii strain RML369-C
    Rickettsia bellii (strain RML369-C): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3