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Q1RGX3

- YBEY_RICBR

UniProt

Q1RGX3 - YBEY_RICBR

Protein

Endoribonuclease YbeY

Gene

ybeY

Organism
Rickettsia bellii (strain RML369-C)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 57 (01 Oct 2014)
      Sequence version 1 (16 May 2006)
      Previous versions | rss
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    Functioni

    Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.UniRule annotation

    Cofactori

    Binds 1 zinc ion.UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi143 – 1431Zinc; catalyticUniRule annotation
    Metal bindingi147 – 1471Zinc; catalyticUniRule annotation
    Metal bindingi153 – 1531Zinc; catalyticUniRule annotation

    GO - Molecular functioni

    1. endoribonuclease activity Source: UniProtKB-HAMAP
    2. metalloendopeptidase activity Source: InterPro
    3. zinc ion binding Source: UniProtKB-HAMAP

    GO - Biological processi

    1. rRNA processing Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Endonuclease, Hydrolase, Nuclease

    Keywords - Biological processi

    Ribosome biogenesis, rRNA processing

    Keywords - Ligandi

    Metal-binding, Zinc

    Enzyme and pathway databases

    BioCyciRBEL336407:GJCY-1348-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Endoribonuclease YbeYUniRule annotation (EC:3.1.-.-UniRule annotation)
    Gene namesi
    Name:ybeYUniRule annotation
    Ordered Locus Names:RBE_1310
    OrganismiRickettsia bellii (strain RML369-C)
    Taxonomic identifieri336407 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiabelli group
    ProteomesiUP000001951: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 183183Endoribonuclease YbeYPRO_0000277991Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi336407.RBE_1310.

    Structurei

    3D structure databases

    ProteinModelPortaliQ1RGX3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the endoribonuclease YbeY family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0319.
    HOGENOMiHOG000132869.
    KOiK07042.
    OMAiDIIIARE.
    OrthoDBiEOG680X6D.

    Family and domain databases

    Gene3Di3.40.390.30. 1 hit.
    HAMAPiMF_00009. Endoribonucl_YbeY.
    InterProiIPR023091. MetalPrtase_cat_dom_prd.
    IPR002036. YbeY.
    IPR020549. YbeY_CS.
    [Graphical view]
    PfamiPF02130. UPF0054. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR00043. TIGR00043. 1 hit.
    PROSITEiPS01306. UPF0054. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q1RGX3-1 [UniParc]FASTAAdd to Basket

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    MINVEIIKNY SKWREHKQIN KALIKKITQK TLSQFDNFSE IKQFELSILL    50
    TNNEEILTLN KQFRNIEKAT NVLSFPANEL NWQDLRFSGN EIASSNKPII 100
    LENLGDSDYM HLGDIAFCHD VIYNESYEQQ KTFENHFIHL LIHSILHLIG 150
    FDHQNDTETK IMENLEIEIL AHFGISSPYL LIK 183
    Length:183
    Mass (Da):21,475
    Last modified:May 16, 2006 - v1
    Checksum:iDF9FD5A17512A8A1
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000087 Genomic DNA. Translation: ABE05391.1.
    RefSeqiYP_538480.1. NC_007940.1.

    Genome annotation databases

    EnsemblBacteriaiABE05391; ABE05391; RBE_1310.
    GeneIDi3995527.
    KEGGirbe:RBE_1310.
    PATRICi17884256. VBIRicBel102610_1476.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000087 Genomic DNA. Translation: ABE05391.1 .
    RefSeqi YP_538480.1. NC_007940.1.

    3D structure databases

    ProteinModelPortali Q1RGX3.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 336407.RBE_1310.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABE05391 ; ABE05391 ; RBE_1310 .
    GeneIDi 3995527.
    KEGGi rbe:RBE_1310.
    PATRICi 17884256. VBIRicBel102610_1476.

    Phylogenomic databases

    eggNOGi COG0319.
    HOGENOMi HOG000132869.
    KOi K07042.
    OMAi DIIIARE.
    OrthoDBi EOG680X6D.

    Enzyme and pathway databases

    BioCyci RBEL336407:GJCY-1348-MONOMER.

    Family and domain databases

    Gene3Di 3.40.390.30. 1 hit.
    HAMAPi MF_00009. Endoribonucl_YbeY.
    InterProi IPR023091. MetalPrtase_cat_dom_prd.
    IPR002036. YbeY.
    IPR020549. YbeY_CS.
    [Graphical view ]
    Pfami PF02130. UPF0054. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR00043. TIGR00043. 1 hit.
    PROSITEi PS01306. UPF0054. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
      Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
      PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: RML369-C.

    Entry informationi

    Entry nameiYBEY_RICBR
    AccessioniPrimary (citable) accession number: Q1RGX3
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 20, 2007
    Last sequence update: May 16, 2006
    Last modified: October 1, 2014
    This is version 57 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Rickettsia bellii strain RML369-C
      Rickettsia bellii (strain RML369-C): entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3