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Q1RGX3 (YBEY_RICBR) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 55. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Endoribonuclease YbeY

EC=3.1.-.-
Gene names
Name:ybeY
Ordered Locus Names:RBE_1310
OrganismRickettsia bellii (strain RML369-C) [Complete proteome] [HAMAP]
Taxonomic identifier336407 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiabelli group

Protein attributes

Sequence length183 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA By similarity. HAMAP-Rule MF_00009

Cofactor

Binds 1 zinc ion By similarity. HAMAP-Rule MF_00009

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00009.

Sequence similarities

Belongs to the endoribonuclease YbeY family.

Ontologies

Keywords
   Biological processRibosome biogenesis
rRNA processing
   Cellular componentCytoplasm
   LigandMetal-binding
Zinc
   Molecular functionEndonuclease
Hydrolase
Nuclease
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processrRNA processing

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionendoribonuclease activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

metalloendopeptidase activity

Inferred from electronic annotation. Source: InterPro

zinc ion binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 183183Endoribonuclease YbeY HAMAP-Rule MF_00009
PRO_0000277991

Sites

Metal binding1431Zinc; catalytic By similarity
Metal binding1471Zinc; catalytic By similarity
Metal binding1531Zinc; catalytic By similarity

Sequences

Sequence LengthMass (Da)Tools
Q1RGX3 [UniParc].

Last modified May 16, 2006. Version 1.
Checksum: DF9FD5A17512A8A1

FASTA18321,475
        10         20         30         40         50         60 
MINVEIIKNY SKWREHKQIN KALIKKITQK TLSQFDNFSE IKQFELSILL TNNEEILTLN 

        70         80         90        100        110        120 
KQFRNIEKAT NVLSFPANEL NWQDLRFSGN EIASSNKPII LENLGDSDYM HLGDIAFCHD 

       130        140        150        160        170        180 
VIYNESYEQQ KTFENHFIHL LIHSILHLIG FDHQNDTETK IMENLEIEIL AHFGISSPYL 


LIK 

« Hide

References

[1]"Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens."
Ogata H., La Scola B., Audic S., Renesto P., Blanc G., Robert C., Fournier P.-E., Claverie J.-M., Raoult D.
PLoS Genet. 2:733-744(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: RML369-C.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000087 Genomic DNA. Translation: ABE05391.1.
RefSeqYP_538480.1. NC_007940.1.

3D structure databases

ProteinModelPortalQ1RGX3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING336407.RBE_1310.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABE05391; ABE05391; RBE_1310.
GeneID3995527.
KEGGrbe:RBE_1310.
PATRIC17884256. VBIRicBel102610_1476.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0319.
HOGENOMHOG000132869.
KOK07042.
OMADIIIARE.
OrthoDBEOG680X6D.
ProtClustDBPRK00016.

Enzyme and pathway databases

BioCycRBEL336407:GJCY-1348-MONOMER.

Family and domain databases

Gene3D3.40.390.30. 1 hit.
HAMAPMF_00009. Endoribonucl_YbeY.
InterProIPR023091. MetalPrtase_cat_dom_prd.
IPR002036. YbeY.
IPR020549. YbeY_CS.
[Graphical view]
PfamPF02130. UPF0054. 1 hit.
[Graphical view]
TIGRFAMsTIGR00043. TIGR00043. 1 hit.
PROSITEPS01306. UPF0054. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameYBEY_RICBR
AccessionPrimary (citable) accession number: Q1RGX3
Entry history
Integrated into UniProtKB/Swiss-Prot: February 20, 2007
Last sequence update: May 16, 2006
Last modified: April 16, 2014
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rickettsia bellii strain RML369-C

Rickettsia bellii (strain RML369-C): entries and gene names