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Protein

Glutamate decarboxylase

Gene

gadB

Organism
Escherichia coli (strain UTI89 / UPEC)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

L-glutamate = 4-aminobutanoate + CO2.UniRule annotation

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

  1. glutamate decarboxylase activity Source: UniProtKB-EC
  2. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. glutamate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

DecarboxylaseUniRule annotation, Lyase

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciECOL364106:GHPQ-1694-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Glutamate decarboxylaseUniRule annotation (EC:4.1.1.15UniRule annotation)
Gene namesi
Name:gadBImported
Ordered Locus Names:UTI89_C1707Imported
OrganismiEscherichia coli (strain UTI89 / UPEC)Imported
Taxonomic identifieri364106 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000001952: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi364106.UTI89_C1707.

Structurei

3D structure databases

ProteinModelPortaliQ1RBS9.
SMRiQ1RBS9. Positions 27-489.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000070228.
KOiK01580.
OMAiFVGTWMD.
OrthoDBiEOG6TFCPW.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR021115. Pyridoxal-P_BS.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.
PROSITEiPS00392. DDC_GAD_HDC_YDC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q1RBS9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MHLLTLSINP TFLMRSNHFK EFKMDKKQVT DLRSELLDSR FGAKSISTIA
60 70 80 90 100
ESKRFPLHEM RDDVAFQIIN DELYLDGNAR QNLATFCQTW DDDNVHKLMD
110 120 130 140 150
LSINKNWIDK EEYPQSAAID LRCVNMVADL WHAPAPKNGQ AVGTNTIGSS
160 170 180 190 200
EACMLGGMAM KWRWRKRMEA AGKPTNKPNL VCGPVQICWH KFARYWDVEL
210 220 230 240 250
REIPMRPGQL FMDPKRMIEA CDENTIGVVP TFGVTYTGNY EFPQPLHDAL
260 270 280 290 300
DKFQADTGID IDMHIDAASG GFLAPFVAPD IVWDFRLPRV KSISASGHKF
310 320 330 340 350
GLAPLGCGWV IWRDEEALPQ ELVFNVDYLG GQIGTFAINF SRPAGQVIAQ
360 370 380 390 400
YYEFLRLGRE GYTKVQNASY QVAAYLADEI AKLGPYEFIC TGRPDEGIPA
410 420 430 440 450
VCFKLKDGED PGYTLYDLSE RLRLRGWQVP AFTLGGEATD IVVMRIMCRR
460 470 480
GFEMDFAELL LEDYKASLKY LSDHPKLQGI AQQNSFKHT
Length:489
Mass (Da):55,440
Last modified:May 16, 2006 - v1
Checksum:iD885B97966EBCAF7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000243 Genomic DNA. Translation: ABE07185.1.
RefSeqiYP_540716.1. NC_007946.1.

Genome annotation databases

EnsemblBacteriaiABE07185; ABE07185; UTI89_C1707.
GeneIDi3991446.
KEGGieci:UTI89_C1707.
PATRICi18453004. VBIEscCol42261_1751.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000243 Genomic DNA. Translation: ABE07185.1.
RefSeqiYP_540716.1. NC_007946.1.

3D structure databases

ProteinModelPortaliQ1RBS9.
SMRiQ1RBS9. Positions 27-489.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi364106.UTI89_C1707.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABE07185; ABE07185; UTI89_C1707.
GeneIDi3991446.
KEGGieci:UTI89_C1707.
PATRICi18453004. VBIEscCol42261_1751.

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000070228.
KOiK01580.
OMAiFVGTWMD.
OrthoDBiEOG6TFCPW.

Enzyme and pathway databases

BioCyciECOL364106:GHPQ-1694-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR021115. Pyridoxal-P_BS.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.
PROSITEiPS00392. DDC_GAD_HDC_YDC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach."
    Chen S.L., Hung C.-S., Xu J., Reigstad C.S., Magrini V., Sabo A., Blasiar D., Bieri T., Meyer R.R., Ozersky P., Armstrong J.R., Fulton R.S., Latreille J.P., Spieth J., Hooton T.M., Mardis E.R., Hultgren S.J., Gordon J.I.
    Proc. Natl. Acad. Sci. U.S.A. 103:5977-5982(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: UTI89 / UPECImported.

Entry informationi

Entry nameiQ1RBS9_ECOUT
AccessioniPrimary (citable) accession number: Q1RBS9
Entry historyi
Integrated into UniProtKB/TrEMBL: May 16, 2006
Last sequence update: May 16, 2006
Last modified: February 4, 2015
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.