Q1R8D1 (Q1R8D1_ECOUT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Pseudouridine synthase RuleBase RU003886
EC=5.4.99.- RuleBase RU003886

Gene names

Name:	rluD EMBL ABE08383.1
Ordered Locus Names:	UTI89_C2927 EMBL ABE08383.1

Organism

Escherichia coli (strain UTI89 / UPEC) [Complete proteome] [HAMAP] EMBL ABE08383.1

Taxonomic identifier

364106 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia › Escherichia coli

Protein attributes

Sequence length	326 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rluA family. RuleBase RU004243

Ontologies

Keywords
Molecular function	Isomerase RuleBase RU003886 Lyase EMBL ABE08383.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	pseudouridine synthesis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: InterPro lyase activity Inferred from electronic annotation. Source: UniProtKB-KW pseudouridine synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q1R8D1 [UniParc]. Last modified May 16, 2006. Version 1. Checksum: 11CF5F1D30CF882D	FASTA	326	37,124
	10 20 30 40 50 60 MAQRVQLTAT VSENQLGQRL DQALAEMFPD YSRSRIKEWI LDQRVLVNGK VCDKPKEKVL 70 80 90 100 110 120 GGEQVAINAE IEEEARFEPQ DIPLDIVYED EDIIVINKPR DLVVHPGAGN PDGTVLNALL 130 140 150 160 170 180 HYYPPIADVP RAGIVHRLDK DTTGLMVVAK TVPAQTRLVE SLQRREITRE YEAVAIGHMT 190 200 210 220 230 240 AGGTVDEPIS RHPTKRTHMA VHPMGKPAVT HYRIMEHFRV HTRLRLRLET GRTHQIRVHM 250 260 270 280 290 300 AHITHPLVGD PVYGGRPRPP KGASEAFIST LRKFDRQSLH ATMLRLYHPI SGIEMEWHAP 310 320 IPQDMVELIE VMRADFEEHK DEVDWL

References

[1]

"Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach." Chen S.L., Hung C.S., Xu J., Reigstad C.S., Magrini V., Sabo A., Blasiar D., Bieri T., Meyer R.R., Ozersky P., Armstrong J.R., Fulton R.S., Latreille J.P., Spieth J., Hooton T.M., Mardis E.R., Hultgren S.J., Gordon J.I. Proc. Natl. Acad. Sci. U.S.A. 103:5977-5982(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: UTI89 / UPEC.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000243 Genomic DNA. Translation: ABE08383.1.
RefSeq	YP_541914.1. NC_007946.1.
3D structure databases
ProteinModelPortal	Q1R8D1.
SMR	Q1R8D1. Positions 2-325.
ModBase	Search...
Protein-protein interaction databases
STRING	364106.UTI89_C2927.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABE08383; ABE08383; UTI89_C2927.
GeneID	3992332.
KEGG	eci:UTI89_C2927.
PATRIC	18455382. VBIEscCol42261_2917.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0564.
HOGENOM	HOG000275919.
KO	K06180.
OMA	KTIPAQT.
ProtClustDB	PRK11180.
Enzyme and pathway databases
BioCyc	ECOL364106:GHPQ-2960-MONOMER.
Family and domain databases
Gene3D	3.10.290.10. 1 hit.
InterPro	IPR020103. PsdUridine_synth_cat_dom. IPR006225. PsdUridine_synth_RluC/D. IPR006224. PsdUridine_synth_RluC/D_CS. IPR006145. PsdUridine_synth_RsuA/RluD. IPR002942. S4_RNA-bd. [Graphical view]
Pfam	PF00849. PseudoU_synth_2. 1 hit. PF01479. S4. 1 hit. [Graphical view]
SMART	SM00363. S4. 1 hit. [Graphical view]
SUPFAM	SSF55120. PsdUridine_synth_cat_dom. 1 hit.
TIGRFAMs	TIGR00005. rluA_subfam. 1 hit.
PROSITE	PS01129. PSI_RLU. 1 hit. PS50889. S4. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q1R8D1_ECOUT

Accession

Primary (citable) accession number: Q1R8D1

Entry history

Integrated into UniProtKB/TrEMBL:	May 16, 2006
Last sequence update:	May 16, 2006
Last modified:	May 1, 2013
This is version 55 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)