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Q1QR09

- Q1QR09_NITHX

UniProt

Q1QR09 - Q1QR09_NITHX

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Protein
Submitted name:

ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module

Gene

Nham_0448

Organism
Nitrobacter hamburgensis (strain X14 / DSM 10229)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciNHAM323097:GHP7-454-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase moduleImported
Gene namesi
Ordered Locus Names:Nham_0448Imported
OrganismiNitrobacter hamburgensis (strain X14 / DSM 10229)Imported
Taxonomic identifieri323097 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeNitrobacter
ProteomesiUP000001953: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi323097.Nham_0448.

Structurei

3D structure databases

ProteinModelPortaliQ1QR09.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiFASEPRE.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q1QR09-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MHDATRLHYD FRLEYDGVFK SWAVTRGPSL DPAEKRLAVE VEDHPLDYGD
60 70 80 90 100
FEGTIPKGQY GGGTVEIWDR GYWYADDPAK GLAKGDLKFA LMGEKLKGEW
110 120 130 140 150
VLVRMKHDRS GGKRTNWLLI KHRDDYAKPG TGEEVLKHDR SVASGRTLRQ
160 170 180 190 200
IAEGKGKAPE PFMMTRRIAG SDAVWDSNKG VAAKARDRNS KHSAVKTSAK
210 220 230 240 250
PASARKRLPT KAKANAIKSE MPDFAGLQLC KTSTRPPSAD GWVHEIKFDG
260 270 280 290 300
YRIQMRIENG DVTLKTRKGL DWTDKFPAIA SAATKLPDAI IDGEIVALNQ
310 320 330 340 350
HGDPDFSAMQ AALSEDKTDE LVFFAFDLLF AEGEDLRPLS LLARKERLRQ
360 370 380 390 400
LLGRSAKSAR ASIRYVEHFD ADGAQVLDTA REAGLEGIIS KRADEPYRAG
410 420 430 440 450
RGGSWLKSKS RAGHEVVIGG WKTTSGKFRS LMAGVYNGDY LVYTGIVGTG
460 470 480 490 500
YGRDTVKRIM PALKAAAASK SPFSGNNAPP GGPEVHWLKP ELVAEIEFAG
510 520 530 540 550
WTADGMVRQA AFKGLRADKP AREVKAEAPS HATVPRLNAT RLAASAAAAA
560 570 580 590 600
RADTTTSRQP RAPAARDRST VMGVAISHPD KALWPDAGDK QPVTKRDLAA
610 620 630 640 650
YMETAGDWII QHIRGRPCSI VRAPDGIGGE TFFQRHAMPG LSDLVTEVKV
660 670 680 690 700
SGDRKPYLQI DRVEGLIAVA QIGGLELHPW NCAPDQYDVP GRLVFDLDPA
710 720 730 740 750
PDVAFPDVIA AAKEMKQRLE TLGLETFCKT TGGKGLHVVT PLAITQKNRL
760 770 780 790 800
NWKQAKMFAQ AVCEQMATDT PDKYLITMSK KQREGKIFLD YLRNDTKSTA
810 820 830 840 850
VAPLSPRARP GATVSMPLNW SQVKAGLDPK RFTLRTAPDL LKKSKAWSGY
860
DEAARPLAAA IGKLVR
Length:866
Mass (Da):94,829
Last modified:May 16, 2006 - v1
Checksum:i991B700C2D5F4819
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000319 Genomic DNA. Translation: ABE61338.1.
RefSeqiYP_575798.1. NC_007964.1.

Genome annotation databases

EnsemblBacteriaiABE61338; ABE61338; Nham_0448.
GeneIDi4030083.
KEGGinha:Nham_0448.
PATRICi22688295. VBINitHam61822_1186.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000319 Genomic DNA. Translation: ABE61338.1 .
RefSeqi YP_575798.1. NC_007964.1.

3D structure databases

ProteinModelPortali Q1QR09.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 323097.Nham_0448.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABE61338 ; ABE61338 ; Nham_0448 .
GeneIDi 4030083.
KEGGi nha:Nham_0448.
PATRICi 22688295. VBINitHam61822_1186.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi FASEPRE.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci NHAM323097:GHP7-454-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: X14 / DSM 10229Imported.

Entry informationi

Entry nameiQ1QR09_NITHX
AccessioniPrimary (citable) accession number: Q1QR09
Entry historyi
Integrated into UniProtKB/TrEMBL: May 16, 2006
Last sequence update: May 16, 2006
Last modified: October 1, 2014
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3