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Q1QR09 (Q1QR09_NITHX) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 58. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Nham_0448 EMBL ABE61338.1
OrganismNitrobacter hamburgensis (strain X14 / DSM 10229) [Complete proteome] [HAMAP] EMBL ABE61338.1
Taxonomic identifier323097 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeNitrobacter

Protein attributes

Sequence length866 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ABE61338.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q1QR09 [UniParc].

Last modified May 16, 2006. Version 1.
Checksum: 991B700C2D5F4819

FASTA86694,829
        10         20         30         40         50         60 
MHDATRLHYD FRLEYDGVFK SWAVTRGPSL DPAEKRLAVE VEDHPLDYGD FEGTIPKGQY 

        70         80         90        100        110        120 
GGGTVEIWDR GYWYADDPAK GLAKGDLKFA LMGEKLKGEW VLVRMKHDRS GGKRTNWLLI 

       130        140        150        160        170        180 
KHRDDYAKPG TGEEVLKHDR SVASGRTLRQ IAEGKGKAPE PFMMTRRIAG SDAVWDSNKG 

       190        200        210        220        230        240 
VAAKARDRNS KHSAVKTSAK PASARKRLPT KAKANAIKSE MPDFAGLQLC KTSTRPPSAD 

       250        260        270        280        290        300 
GWVHEIKFDG YRIQMRIENG DVTLKTRKGL DWTDKFPAIA SAATKLPDAI IDGEIVALNQ 

       310        320        330        340        350        360 
HGDPDFSAMQ AALSEDKTDE LVFFAFDLLF AEGEDLRPLS LLARKERLRQ LLGRSAKSAR 

       370        380        390        400        410        420 
ASIRYVEHFD ADGAQVLDTA REAGLEGIIS KRADEPYRAG RGGSWLKSKS RAGHEVVIGG 

       430        440        450        460        470        480 
WKTTSGKFRS LMAGVYNGDY LVYTGIVGTG YGRDTVKRIM PALKAAAASK SPFSGNNAPP 

       490        500        510        520        530        540 
GGPEVHWLKP ELVAEIEFAG WTADGMVRQA AFKGLRADKP AREVKAEAPS HATVPRLNAT 

       550        560        570        580        590        600 
RLAASAAAAA RADTTTSRQP RAPAARDRST VMGVAISHPD KALWPDAGDK QPVTKRDLAA 

       610        620        630        640        650        660 
YMETAGDWII QHIRGRPCSI VRAPDGIGGE TFFQRHAMPG LSDLVTEVKV SGDRKPYLQI 

       670        680        690        700        710        720 
DRVEGLIAVA QIGGLELHPW NCAPDQYDVP GRLVFDLDPA PDVAFPDVIA AAKEMKQRLE 

       730        740        750        760        770        780 
TLGLETFCKT TGGKGLHVVT PLAITQKNRL NWKQAKMFAQ AVCEQMATDT PDKYLITMSK 

       790        800        810        820        830        840 
KQREGKIFLD YLRNDTKSTA VAPLSPRARP GATVSMPLNW SQVKAGLDPK RFTLRTAPDL 

       850        860 
LKKSKAWSGY DEAARPLAAA IGKLVR 

« Hide

References

[1]"Complete sequence of chromosome of Nitrobacter hamburgensis X14."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Kyrpides N., Ivanova N., Ward B., Arp D., Klotz M., Stein L., O'Mullan G., Starkenburg S., Sayavedra L., Poret-Peterson A.T., Gentry M.E., Bruce D., Richardson P.
Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: X14 / DSM 10229.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000319 Genomic DNA. Translation: ABE61338.1.
RefSeqYP_575798.1. NC_007964.1.

3D structure databases

ProteinModelPortalQ1QR09.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING323097.Nham_0448.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABE61338; ABE61338; Nham_0448.
GeneID4030083.
KEGGnha:Nham_0448.
PATRIC22688295. VBINitHam61822_1186.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMALELHPWN.
OrthoDBEOG661H49.
ProtClustDBPRK05972.

Enzyme and pathway databases

BioCycNHAM323097:GHP7-454-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ1QR09_NITHX
AccessionPrimary (citable) accession number: Q1QR09
Entry history
Integrated into UniProtKB/TrEMBL: May 16, 2006
Last sequence update: May 16, 2006
Last modified: April 16, 2014
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)