Q1QR09 (Q1QR09_NITHX) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module EMBL ABE61338.1

Gene names

Ordered Locus Names:

Nham_0448 EMBL ABE61338.1

Organism

Nitrobacter hamburgensis (strain X14 / DSM 10229) [Complete proteome] [HAMAP] EMBL ABE61338.1

Taxonomic identifier

323097 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Nitrobacter › Nitrobacter hamburgensis

Protein attributes

Sequence length	866 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABE61338.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q1QR09 [UniParc]. Last modified May 16, 2006. Version 1. Checksum: 991B700C2D5F4819	FASTA	866	94,829
	10 20 30 40 50 60 MHDATRLHYD FRLEYDGVFK SWAVTRGPSL DPAEKRLAVE VEDHPLDYGD FEGTIPKGQY 70 80 90 100 110 120 GGGTVEIWDR GYWYADDPAK GLAKGDLKFA LMGEKLKGEW VLVRMKHDRS GGKRTNWLLI 130 140 150 160 170 180 KHRDDYAKPG TGEEVLKHDR SVASGRTLRQ IAEGKGKAPE PFMMTRRIAG SDAVWDSNKG 190 200 210 220 230 240 VAAKARDRNS KHSAVKTSAK PASARKRLPT KAKANAIKSE MPDFAGLQLC KTSTRPPSAD 250 260 270 280 290 300 GWVHEIKFDG YRIQMRIENG DVTLKTRKGL DWTDKFPAIA SAATKLPDAI IDGEIVALNQ 310 320 330 340 350 360 HGDPDFSAMQ AALSEDKTDE LVFFAFDLLF AEGEDLRPLS LLARKERLRQ LLGRSAKSAR 370 380 390 400 410 420 ASIRYVEHFD ADGAQVLDTA REAGLEGIIS KRADEPYRAG RGGSWLKSKS RAGHEVVIGG 430 440 450 460 470 480 WKTTSGKFRS LMAGVYNGDY LVYTGIVGTG YGRDTVKRIM PALKAAAASK SPFSGNNAPP 490 500 510 520 530 540 GGPEVHWLKP ELVAEIEFAG WTADGMVRQA AFKGLRADKP AREVKAEAPS HATVPRLNAT 550 560 570 580 590 600 RLAASAAAAA RADTTTSRQP RAPAARDRST VMGVAISHPD KALWPDAGDK QPVTKRDLAA 610 620 630 640 650 660 YMETAGDWII QHIRGRPCSI VRAPDGIGGE TFFQRHAMPG LSDLVTEVKV SGDRKPYLQI 670 680 690 700 710 720 DRVEGLIAVA QIGGLELHPW NCAPDQYDVP GRLVFDLDPA PDVAFPDVIA AAKEMKQRLE 730 740 750 760 770 780 TLGLETFCKT TGGKGLHVVT PLAITQKNRL NWKQAKMFAQ AVCEQMATDT PDKYLITMSK 790 800 810 820 830 840 KQREGKIFLD YLRNDTKSTA VAPLSPRARP GATVSMPLNW SQVKAGLDPK RFTLRTAPDL 850 860 LKKSKAWSGY DEAARPLAAA IGKLVR

References

[1]

"Complete sequence of chromosome of Nitrobacter hamburgensis X14." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. , Hauser L., Kyrpides N., Ivanova N., Ward B., Arp D., Klotz M., Stein L., O'Mullan G., Starkenburg S., Sayavedra L., Poret-Peterson A.T., Gentry M.E., Bruce D., Richardson P. Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: X14 / DSM 10229.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000319 Genomic DNA. Translation: ABE61338.1.
RefSeq	YP_575798.1. NC_007964.1.
3D structure databases
ProteinModelPortal	Q1QR09.
ModBase	Search...
Protein-protein interaction databases
STRING	323097.Nham_0448.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABE61338; ABE61338; Nham_0448.
GeneID	4030083.
KEGG	nha:Nham_0448.
PATRIC	22688295. VBINitHam61822_1186.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3285.
HOGENOM	HOG000222509.
KO	K01971.
OMA	MANDRER.
ProtClustDB	PRK05972.
Enzyme and pathway databases
BioCyc	NHAM323097:GHP7-516-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q1QR09_NITHX

Accession

Primary (citable) accession number: Q1QR09

Entry history

Integrated into UniProtKB/TrEMBL:	May 16, 2006
Last sequence update:	May 16, 2006
Last modified:	May 1, 2013
This is version 53 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)