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Q1QR09

- Q1QR09_NITHX

UniProt

Q1QR09 - Q1QR09_NITHX

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Protein
Submitted name: ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module
Gene
Nham_0448
Organism
Nitrobacter hamburgensis (strain X14 / DSM 10229)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciNHAM323097:GHP7-454-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase moduleImported
Gene namesi
Ordered Locus Names:Nham_0448Imported
OrganismiNitrobacter hamburgensis (strain X14 / DSM 10229)Imported
Taxonomic identifieri323097 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeNitrobacter
ProteomesiUP000001953: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi323097.Nham_0448.

Structurei

3D structure databases

ProteinModelPortaliQ1QR09.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiFASEPRE.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q1QR09-1 [UniParc]FASTAAdd to Basket

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MHDATRLHYD FRLEYDGVFK SWAVTRGPSL DPAEKRLAVE VEDHPLDYGD    50
FEGTIPKGQY GGGTVEIWDR GYWYADDPAK GLAKGDLKFA LMGEKLKGEW 100
VLVRMKHDRS GGKRTNWLLI KHRDDYAKPG TGEEVLKHDR SVASGRTLRQ 150
IAEGKGKAPE PFMMTRRIAG SDAVWDSNKG VAAKARDRNS KHSAVKTSAK 200
PASARKRLPT KAKANAIKSE MPDFAGLQLC KTSTRPPSAD GWVHEIKFDG 250
YRIQMRIENG DVTLKTRKGL DWTDKFPAIA SAATKLPDAI IDGEIVALNQ 300
HGDPDFSAMQ AALSEDKTDE LVFFAFDLLF AEGEDLRPLS LLARKERLRQ 350
LLGRSAKSAR ASIRYVEHFD ADGAQVLDTA REAGLEGIIS KRADEPYRAG 400
RGGSWLKSKS RAGHEVVIGG WKTTSGKFRS LMAGVYNGDY LVYTGIVGTG 450
YGRDTVKRIM PALKAAAASK SPFSGNNAPP GGPEVHWLKP ELVAEIEFAG 500
WTADGMVRQA AFKGLRADKP AREVKAEAPS HATVPRLNAT RLAASAAAAA 550
RADTTTSRQP RAPAARDRST VMGVAISHPD KALWPDAGDK QPVTKRDLAA 600
YMETAGDWII QHIRGRPCSI VRAPDGIGGE TFFQRHAMPG LSDLVTEVKV 650
SGDRKPYLQI DRVEGLIAVA QIGGLELHPW NCAPDQYDVP GRLVFDLDPA 700
PDVAFPDVIA AAKEMKQRLE TLGLETFCKT TGGKGLHVVT PLAITQKNRL 750
NWKQAKMFAQ AVCEQMATDT PDKYLITMSK KQREGKIFLD YLRNDTKSTA 800
VAPLSPRARP GATVSMPLNW SQVKAGLDPK RFTLRTAPDL LKKSKAWSGY 850
DEAARPLAAA IGKLVR 866
Length:866
Mass (Da):94,829
Last modified:May 16, 2006 - v1
Checksum:i991B700C2D5F4819
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000319 Genomic DNA. Translation: ABE61338.1.
RefSeqiYP_575798.1. NC_007964.1.

Genome annotation databases

EnsemblBacteriaiABE61338; ABE61338; Nham_0448.
GeneIDi4030083.
KEGGinha:Nham_0448.
PATRICi22688295. VBINitHam61822_1186.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000319 Genomic DNA. Translation: ABE61338.1 .
RefSeqi YP_575798.1. NC_007964.1.

3D structure databases

ProteinModelPortali Q1QR09.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 323097.Nham_0448.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABE61338 ; ABE61338 ; Nham_0448 .
GeneIDi 4030083.
KEGGi nha:Nham_0448.
PATRICi 22688295. VBINitHam61822_1186.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi FASEPRE.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci NHAM323097:GHP7-454-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: X14 / DSM 10229.

Entry informationi

Entry nameiQ1QR09_NITHX
AccessioniPrimary (citable) accession number: Q1QR09
Entry historyi
Integrated into UniProtKB/TrEMBL: May 16, 2006
Last sequence update: May 16, 2006
Last modified: May 14, 2014
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

Similar proteinsi