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Protein

30S ribosomal protein S10

Gene

rpsJ

Organism
Nitrobacter hamburgensis (strain DSM 10229 / NCIMB 13809 / X14)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Involved in the binding of tRNA to the ribosomes.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S10UniRule annotation
Gene namesi
Name:rpsJUniRule annotation
Ordered Locus Names:Nham_1544
OrganismiNitrobacter hamburgensis (strain DSM 10229 / NCIMB 13809 / X14)
Taxonomic identifieri323097 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeNitrobacter
Proteomesi
  • UP000001953 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002585591 – 10230S ribosomal protein S10Add BLAST102

Proteomic databases

PRIDEiQ1QN31.

Interactioni

Protein-protein interaction databases

STRINGi323097.Nham_1544.

Structurei

3D structure databases

ProteinModelPortaliQ1QN31.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S10P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108Z10. Bacteria.
COG0051. LUCA.
HOGENOMiHOG000270246.
KOiK02946.
OMAiKIRRYTV.
OrthoDBiPOG091H014M.

Family and domain databases

Gene3Di3.30.70.600. 1 hit.
HAMAPiMF_00508. Ribosomal_S10. 1 hit.
InterProiIPR001848. Ribosomal_S10.
IPR018268. Ribosomal_S10_CS.
IPR027486. Ribosomal_S10_dom.
[Graphical view]
PANTHERiPTHR11700. PTHR11700. 1 hit.
PfamiPF00338. Ribosomal_S10. 1 hit.
[Graphical view]
PRINTSiPR00971. RIBOSOMALS10.
SMARTiSM01403. Ribosomal_S10. 1 hit.
[Graphical view]
SUPFAMiSSF54999. SSF54999. 1 hit.
TIGRFAMsiTIGR01049. rpsJ_bact. 1 hit.
PROSITEiPS00361. RIBOSOMAL_S10. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q1QN31-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNGQNIRIRL KAFDHRILDT STREIVNTAK RTGAQVRGPI PLPTRIEKFT
60 70 80 90 100
VNRSPHVDKK SREQFEMRTH KRLLDIVDPT PQTVDALMKL DLAAGVDVEI

KL
Length:102
Mass (Da):11,669
Last modified:May 16, 2006 - v1
Checksum:i60709820CED359DA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000319 Genomic DNA. Translation: ABE62366.1.
RefSeqiWP_002712302.1. NC_007964.1.

Genome annotation databases

EnsemblBacteriaiABE62366; ABE62366; Nham_1544.
GeneIDi23253668.
KEGGinha:Nham_1544.
PATRICi22690741. VBINitHam61822_2395.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000319 Genomic DNA. Translation: ABE62366.1.
RefSeqiWP_002712302.1. NC_007964.1.

3D structure databases

ProteinModelPortaliQ1QN31.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi323097.Nham_1544.

Proteomic databases

PRIDEiQ1QN31.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABE62366; ABE62366; Nham_1544.
GeneIDi23253668.
KEGGinha:Nham_1544.
PATRICi22690741. VBINitHam61822_2395.

Phylogenomic databases

eggNOGiENOG4108Z10. Bacteria.
COG0051. LUCA.
HOGENOMiHOG000270246.
KOiK02946.
OMAiKIRRYTV.
OrthoDBiPOG091H014M.

Family and domain databases

Gene3Di3.30.70.600. 1 hit.
HAMAPiMF_00508. Ribosomal_S10. 1 hit.
InterProiIPR001848. Ribosomal_S10.
IPR018268. Ribosomal_S10_CS.
IPR027486. Ribosomal_S10_dom.
[Graphical view]
PANTHERiPTHR11700. PTHR11700. 1 hit.
PfamiPF00338. Ribosomal_S10. 1 hit.
[Graphical view]
PRINTSiPR00971. RIBOSOMALS10.
SMARTiSM01403. Ribosomal_S10. 1 hit.
[Graphical view]
SUPFAMiSSF54999. SSF54999. 1 hit.
TIGRFAMsiTIGR01049. rpsJ_bact. 1 hit.
PROSITEiPS00361. RIBOSOMAL_S10. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRS10_NITHX
AccessioniPrimary (citable) accession number: Q1QN31
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 31, 2006
Last sequence update: May 16, 2006
Last modified: November 2, 2016
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.